Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02224 ATGTCTTCTTCCGGCGGCGTCACCTCCGGCAGCCCTCAGCAATACTTCTGCCACCAGTGCAACCGCACAGTCTCCATCGTCCCTTCTTCCTCCGAGCTCCTCTGCCCTAACTGCAACGAAGGCTTCCTCGAAGAACTCGAAACTCCAATCCCTAACCCTAACTTCAGCAATCCTTTCTTCTCTTTCAACTCTGACTTCGCCGGAGGTCCCTCCGCCGGAAACCTCCCGTTCTTATTCTCCGGTGGTGGCGACGATCTATCCACGCTGCTTGGCGGCGGCGTTGGTAACACCGCCGCCTCCGGCGAAGCCTTTAACCCCTTTGTGTTCCTCCAGAACTACCTCCAAACCCTAAGAGCTGGCGGCGCCAACGTCCAGTTCGTGATCGAGAATTCCGGCGACCCTACCACCGGAACATTCCGGTTTCCCGGAGGGAACATGACTCACGGCGATTACTTCTTCGGCCCGGGGCTCGAGGAGCTGATCCAGCAGCTGGCGGAGAACGATCCGAATCGGTACGGGACGCCGCCAGCATCGAAGTCAGCTGTGGAGGGGCTGCCGGACGTGTCGGTCACAGAGGAGCTGCTGGAATCGGATTCTTCTCAGTGCGCGGTGTGCAAGGACACCTTCAAGCTTGGCGAATCGGCGAAGCAGATCCCCTGTAAGCACATATACCATTCTGATTGCATCTTGCCATGGCTGGAACTGCATAATTCGTGCCCAGTTTGCCGTTACGAGTTGCCTACCGATGATCCGGATTATGAGCGGAGGGCTCAGCGTGGTGGGGTTCCTACGCCTGCCCCAGTGAACCGGTCTGTGGGAGCAGAGTGGTGGCGGTGGTGGTGGTGTTGGCGGTGA 855 0.586 MSSSGGVTSGSPQQYFCHQCNRTVSIVPSSSELLCPNCNEGFLEELETPIPNPNFSNPFFSFNSDFAGGPSAGNLPFLFSGGGDDLSTLLGGGVGNTAASGEAFNPFVFLQNYLQTLRAGGANVQFVIENSGDPTTGTFRFPGGNMTHGDYFFGPGLEELIQQLAENDPNRYGTPPASKSAVEGLPDVSVTEELLESDSSQCAVCKDTFKLGESAKQIPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYERRAQRGGVPTPAPVNRSVGAEWWRWWWCWR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02224 284 CDD RING-H2_RNF126_like 201 243 - -
Adu05g02224 284 Pfam zinc-ribbon 13 46 IPR039525 GO:0061630
Adu05g02224 284 SMART ring_2 202 242 IPR001841 -
Adu05g02224 284 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Adu05g02224 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 261 - -
Adu05g02224 284 SUPERFAMILY RING/U-box 185 249 - -
Adu05g02224 284 Pfam Zinc finger, C3HC4 type (RING finger) 201 242 - -
Adu05g02224 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 8 261 - -
Adu05g02224 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 249 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g02224 Adu-Chr5 85151183 85152037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g02224 160 258 C3H Transcription Factor Family AT5G15820 55.556 2.55e-34 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02224 - K11982 gmx:100784504 365.155