Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02142 ATGTCTCAGCCAACCCCAACTCAGGAATTGGTCGCCAAGGATCTTCATGGTTACGAATGGCGCTTTAAGCATATAGTTAGAGGTCAGCCACGCAGGCACTTGATCACAACTGGATGGATTACTTTTGTAGCTTCGAAGAGATTAGTCGCTGGAGACCCCTTTGTGTTTCTGAGGATTAAATTTCATGTTTTCTTCATATGA 201 0.4378 MSQPTPTQELVAKDLHGYEWRFKHIVRGQPRRHLITTGWITFVASKRLVAGDPFVFLRIKFHVFFI 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02142 66 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 58 IPR044835 GO:0003677|GO:0006355|GO:0009725
Adu05g02142 66 SUPERFAMILY DNA-binding pseudobarrel domain 2 65 IPR015300 -
Adu05g02142 66 CDD B3_DNA 4 66 IPR003340 GO:0003677
Adu05g02142 66 Gene3D - 1 66 IPR015300 -
Adu05g02142 66 ProSiteProfiles B3 DNA-binding domain profile. 1 66 IPR003340 GO:0003677
Adu05g02142 66 Pfam B3 DNA binding domain 5 59 IPR003340 GO:0003677
Adu05g02142 66 PANTHER AUXIN RESPONSE FACTOR 11 1 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g02142 Adu-Chr5 83518912 83519194 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g02142 1 58 B3 DNA Binding Superfamily AT2G46530 87.931 4.91e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu05g02142 B3 9.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02142 K14486 - gmx:100779003 115.546