Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02073 ATGGATGTTGACTCGGAACCACTCAGTTCACAAGACAACGTCGAAGATCCCATGATGACTAGTGTGGAAGAAAATGTTAACTGCACTTGTGATTGTGGTGGCAGCAGTAGTAAGTGTGTGTCTGTGACGGCTGATGATATTATAAACCAGACCTTTGAAACATCAGATGCAGCTTATAACTTGTATGTACGTTATGCGAGGTGTCTCGGGTTTGGAGTTTACAAGGGTGATACAGCACGTGGAAAAGATGGAACACAGCGCAGAAGGAGGTTTTTTTGCAGCAAGGAAGGAAAGAGAGCCGAGAAATACATATCTAGTTTGAGTAGGAAGCGGGAGCATAGAGCGCTGACTCGCACTGGTTGTGAAGCCATGCTTGCGGTaacaacatcaaggtgtgaggcgATAAACAACTTCATTAAGAGGTTTATTGGCATTCGCCAAAGTCTTCTAGAGTTGGTCCAAAATCTTGAACATGTTCTTAGGGACTATAGAAACAATGAATTGGTTTCTCAATTTAAGACGCTGTATGGGGAGCCCGTTCTAACTACGGGGTTAGAAGCGTTGGAGCTTTCTGCTGCCAATTTTTACACTAGGGAGATTCTTGGAGAAGTAAAAAAGGAGATTCAAGGAGTAGTCGCATTAGATATAATAAATGAGGAAAACATATCAACCACTGTTGTGTTAAAAGTTAAGGAGTGTGACAGGAGACAATATATTTATAACGTACTTTATGATCTCAATACTGAGCATATGGAGTGTGAATGTAGTCGGTGGAGTAGTGAAGGCATTCCTTGCAGGCACATGTTTTGTGCAATGAAAAGGGTAGGTTTACAGAAGTTGCCAGATAGTCTTCTTTTGAGAAGATGGTTGAAGGATGCCAAGAAGTATCTGGACGAAAGTTCTATTGGAGGCACTACGCAAGACAGAGAAAGAGAATTTTTAATGCGCTATGGCGCATTGTCAATGGCAGCTACGTGGATGGTATTCTTAGGAGCTCAAGATGGTCCTTCTTTCCATGACGCTATGAATGAAGTCTGTCGTTGGACCCAAACACTAGAACAAAAATCTGACTTGAAAAGACAAACAACAGATTCTACCACGCCAAACTTTGTTGGTGACCCTTCAGTGGTCAAGACAAAAGGAGCACCCAAGGGGAAAAAGGAGAGGGGTAAACGGAGGTGCACTAAATGCAACAATGCTGGTCATGTAAAGAATAAATGTCCTGTGAGGAATGACGGTGACGATTTGGGGGATAAGACTGGTAATGGCGCGCAAGCTAGCTTTGGTACCAAGGAGGAGCTTCCCAAGGACCCTATGGCTTCTCAAGAGACATTACCAGTGCCAAATACAGAAGTAAATGTACCTGTGCAGCAAGAGTCTGGGCTAGGTGATTCAGGATTGATTAATGGCCATGAGAATCCCATCCCACCATATGAAAGTCATCAGTGGCTATTACAGCTTCCAGAGCCGTTTAGTGTTATTTTCACATGGTTTGCCGCTAATCCCCTCCTTGTGTGGTTGGCTCAGTCACTTACAGGTGCTATTATAAAGGATTCTGTGATTATAGAGTGGCGAGCCATGACTCTGCCTGATAGATACATTGAGCATTGA 1611 0.4277 MDVDSEPLSSQDNVEDPMMTSVEENVNCTCDCGGSSSKCVSVTADDIINQTFETSDAAYNLYVRYARCLGFGVYKGDTARGKDGTQRRRRFFCSKEGKRAEKYISSLSRKREHRALTRTGCEAMLAVTTSRCEAINNFIKRFIGIRQSLLELVQNLEHVLRDYRNNELVSQFKTLYGEPVLTTGLEALELSAANFYTREILGEVKKEIQGVVALDIINEENISTTVVLKVKECDRRQYIYNVLYDLNTEHMECECSRWSSEGIPCRHMFCAMKRVGLQKLPDSLLLRRWLKDAKKYLDESSIGGTTQDREREFLMRYGALSMAATWMVFLGAQDGPSFHDAMNEVCRWTQTLEQKSDLKRQTTDSTTPNFVGDPSVVKTKGAPKGKKERGKRRCTKCNNAGHVKNKCPVRNDGDDLGDKTGNGAQASFGTKEELPKDPMASQETLPVPNTEVNVPVQQESGLGDSGLINGHENPIPPYESHQWLLQLPEPFSVIFTWFAANPLLVWLAQSLTGAIIKDSVIIEWRAMTLPDRYIEH 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02073 536 MobiDBLite consensus disorder prediction 384 399 - -
Adu05g02073 536 SMART 26again6 251 278 IPR006564 GO:0008270
Adu05g02073 536 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 128 306 IPR031052 GO:0006355
Adu05g02073 536 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 50 140 IPR031052 GO:0006355
Adu05g02073 536 SUPERFAMILY Retrovirus zinc finger-like domains 383 412 IPR036875 GO:0003676|GO:0008270
Adu05g02073 536 Coils Coil 146 166 - -
Adu05g02073 536 ProSiteProfiles Zinc finger SWIM-type profile. 240 276 IPR007527 GO:0008270
Adu05g02073 536 Pfam FAR1 DNA-binding domain 61 130 IPR004330 -
Adu05g02073 536 ProSiteProfiles Zinc finger CCHC-type profile. 392 408 IPR001878 GO:0003676|GO:0008270
Adu05g02073 536 MobiDBLite consensus disorder prediction 357 445 - -
Adu05g02073 536 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 128 306 - -
Adu05g02073 536 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 50 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g02073 Adu-Chr5 82277555 82281303 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Adu05g02073 FAR1 1.3e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02073 - - ahf:112717474 705.286