Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01997 ATGTACTCTGCCGGAGACCCAAAATCAGAAGAACACTCCCACACCGTCGACCCCCACAACACAAACCTATCATTTTTCTTCCAAAAACTCGCACAAATTCTTCATCCTCGCCCCCAATCTAAGCCCGTTTTTTCTTTCCTAAATTTCCCAATTTGGAACCAAGAAGAGGAAGAGTACGACGAAGAGGAATTCGGTTCTTCTAAGAAACAAGGCCCTTCCTCTGCCCCTAATAACGCCAATAACACCAACAAAGATGCCAAAGCTGTTGATAAAGCAAGCGTGATAAGATCAAAACATTCGGTGACTGAGCAGCGAAGAAGAAGCAAGATAAATGAGAGATTTCAGATATTGAGGGATCTCATACCTCATAGTGATCAAAAGAGGGACACAGCATCATTCTTACTGGAGGTGATTGAGTATGTTCAGTACTTACAGGAGAAGGTACAAAAGTATGAAGGCTCATATCAGGGTTGGGGTCATGAACCCTCAAAGTTGATGCCATGGAGAAATAGCCATTGGCGTGTGCAAAGCTTTGTTGGGCAACCACAAGCCATAAAGAATGGTTCAGGTCCTGTGTCACCTTTTCCTGGAAAGTTTGACGAAAGCAACATTAGTATCTCTCCAACTATGCTTAGCGGCAACCAGAATATGATAGACACCGATCAGGGTAGGGATATTGTCAGCAAAGCATCCGAAGGACAAACTGATTTAGCTAGCAAGGGAATAGCTCTGCCCTTGGGTATGCACCCAAACATGTCTATTCCTGTCAGAAGCGATGGTGTACTTTCACATCCTCTACAGGGATCTGTTTCAGAAGCGCAGTCAACTGAGTGCCCTGCCGCTAGTGAACCACTGAGCCAACAGGACGAGCTGACTATTGAAGGAGGGACAATCAGCATTTCTAGTGTGTACTCCCAAGGGTTGTTGAACAATCTGACTCAGGCACTACAGAGTGCTGGTTTAGATCTATCACAGGCCAGCATTTCGGTTCAGATTAATCTTGGAAAACGAGCAAACAATGGACCAAGCTGTGGGACCTCTTCTCCCAAGAATCACGACATGGTTCCTTCCAGCAACCAAGCTTTTGCACAGTTTAGAGATGCAGGCAGTGAAGACTCGGACCAAGCTCAGAAACGTCTGAAAACATTCAAGTGA 1155 0.4537 MYSAGDPKSEEHSHTVDPHNTNLSFFFQKLAQILHPRPQSKPVFSFLNFPIWNQEEEEYDEEEFGSSKKQGPSSAPNNANNTNKDAKAVDKASVIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWGHEPSKLMPWRNSHWRVQSFVGQPQAIKNGSGPVSPFPGKFDESNISISPTMLSGNQNMIDTDQGRDIVSKASEGQTDLASKGIALPLGMHPNMSIPVRSDGVLSHPLQGSVSEAQSTECPAASEPLSQQDELTIEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANNGPSCGTSSPKNHDMVPSSNQAFAQFRDAGSEDSDQAQKRLKTFK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01997 384 Gene3D - 74 163 IPR036638 GO:0046983
Adu05g01997 384 MobiDBLite consensus disorder prediction 58 107 - -
Adu05g01997 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 165 IPR036638 GO:0046983
Adu05g01997 384 Pfam Helix-loop-helix DNA-binding domain 96 145 IPR011598 GO:0046983
Adu05g01997 384 MobiDBLite consensus disorder prediction 337 360 - -
Adu05g01997 384 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 53 382 IPR044295 GO:0003700|GO:0006351|GO:0046983
Adu05g01997 384 MobiDBLite consensus disorder prediction 68 87 - -
Adu05g01997 384 MobiDBLite consensus disorder prediction 89 107 - -
Adu05g01997 384 PANTHER TRANSCRIPTION FACTOR BIM2 53 382 - -
Adu05g01997 384 CDD bHLH_AtBIM_like 93 169 - -
Adu05g01997 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 144 IPR011598 GO:0046983
Adu05g01997 384 MobiDBLite consensus disorder prediction 264 285 - -
Adu05g01997 384 SMART finulus 100 150 IPR011598 GO:0046983
Adu05g01997 384 MobiDBLite consensus disorder prediction 255 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01997 Adu-Chr5 78357167 78362836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01997 53 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 58.528 3.64e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu05g01997 HLH 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01997 - - gmx:100816055 528.094