Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01967 ATGGGTAGAGGGAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACAGGCAAGTGACGTTTGCAAAGAGAAGAAACGGTTTGCTGAAGAAGGCTTATGAGCTTTCTATCCTCTGTGATGCCGAAGTTGCTCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGCACTTCTAGCATGGCGAAGACACTTGAACGGTACCAGAAATGCAGTTATGGTGCCTTGGAAGTAAATCACCAACCTGCTATGGAGACACAGAGGCGCTATCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGCACTACAGAAGACTCAAAGAAATCTCCTTGGGGAAGAATTGGATAACTTAGATGTTAACGAGCTTGAACGGCTTGAGCGTCAGCTTGACTCCTCGTTGAAGCAAATTAGGTCTAACAAGACACAACTTTTGCTCGACCAACTCTCGGATTTGCAAAGAAAGGAAGAGATGCTGTTGGAAACAAATAATGTCCTCCGGAGCAAGTTGGAGGAAATTAATATGGCGATTCAACCAACATGGGAAGCTAGGGAGCAAAATGCTCCCTACAGCCGACACCCTCAGCAATCAGAGGGATACTATGAGACAACACAATGCAATAGCACATTACAAATCGGATACGGTTCTTCGGTGACAAATGATGCAGTAGGTGGTGCAGGAACATCAACCCAAAATGCTAGTGAATTCATGCATGGATGGATGGAA 732 0.4481 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCSTSSMAKTLERYQKCSYGALEVNHQPAMETQRRYQEYLKLKSKVEALQKTQRNLLGEELDNLDVNELERLERQLDSSLKQIRSNKTQLLLDQLSDLQRKEEMLLETNNVLRSKLEEINMAIQPTWEAREQNAPYSRHPQQSEGYYETTQCNSTLQIGYGSSVTNDAVGGAGTSTQNASEFMHGWME 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01967 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Adu05g01967 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu05g01967 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu05g01967 244 PANTHER MADS BOX PROTEIN 1 227 - -
Adu05g01967 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Adu05g01967 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu05g01967 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu05g01967 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu05g01967 244 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Adu05g01967 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu05g01967 244 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu05g01967 244 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Adu05g01967 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Adu05g01967 244 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 227 - -
Adu05g01967 244 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01967 Adu-Chr5 72418982 72437378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01967 1 215 MADS-box Gene Family AT5G15800 67.873 1.16e-99 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu05g01967 K-box 7.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01967 K09264 - gmx:100811049 395.971