Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01957 ATGGAACCTTGGAGTTATGTTCCTGATGAGAAAGGATATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTGTGAGAAGTAGAAAGGCAATGACTGAATGGGACAACAAAGCCTCTTGTAACTTCGAGAGAGGCGGTTTCAATTCGGAAAGAGAGGTAGTTAGGAGCATGGAATTCGTAGACTTGGGGTTCCCGGATTTGTTCCGAAAGCCCTTCGAGCTAGATAGTAATTTGAGTAGAAGAGGGAATACCTCTGCTCAAGTTATTGACTTGGATTCTTCTCTTGGGGAAGAAGAATCCGAGTCAAAGCATTTGAGTTCTTTAGGTGAATTGAAGGCTCAAGATACGTCATTGATCGATCTGAAGCTAGGGAGAATAGCAGATTGTCAAGCTGCAAGCAATGATAAAGTTGGAAATGAAGGGTTCACTTTAATACCAATGCAACAACCAAGTCCGACCACACTGGCAAAGAGAGCTCGCACTTCATGCTCGCCGAATCAGACTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGTTCCTCAAAAGATTACCACAAAAGGCACAAGGTTTGTGATGTTCATTCCAAGACAGCTAAAGTTATTGTTAACGGTATTGAACAGAGATTTTGTCAGCAATGCAGCAGGTTCCAATTGTTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGCAGGCGTCTAGCAGGACACAATGAACGGCGAAGGAAACCTCAGTTTGATTATATGACTAGTAAACAGCATAAGATACTTCATTCGCATCAAGGTGCAAGATATATGGAGTCTTCCTTACAAAAGAGGCCACAATTTTCATTTCCAGACATATTTCGAAGTGGCAAGTATGATAAAATCTCTCAGAATGGCAATGTCAAATTAGAAGAGGAGTTTATTTTCAGCCCTCAATTCGCAGCACCGGTCGCGCATGGTCAGGAGTTATCTAGCCGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGATTCCATCGCGCCCCTCAGAAGAAAATCCTTTAGCCAGCTCCTTTAGTTTTCACAGCATCTCTGAAATGCCTTTGGATATAAGCAATGAGGGTAAATACGTTGTGGACGAGTCCTTTCCGTGCGAGATGAACCATAAAGAATTTATCAAGAGTGAATCGGCAATGCTTTCTGATGCCGGCCACCCTGATCATCGAGCCAGTAGTGATGACATTTGTTCGCCCTTGGAACATGGATCCACTGTGGACTTATTCCAGTTATCATCCAATCTTGAAAGGGTAGAGCAGAAGAGAAATTCTGTTTTGGTAAAGTGGGAAAATGAGAACTCTTGTTTCCCAGCATTGTAA 1347 0.4254 MEPWSYVPDEKGYLFSDEMDFSLDAFVRSRKAMTEWDNKASCNFERGGFNSEREVVRSMEFVDLGFPDLFRKPFELDSNLSRRGNTSAQVIDLDSSLGEEESESKHLSSLGELKAQDTSLIDLKLGRIADCQAASNDKVGNEGFTLIPMQQPSPTTLAKRARTSCSPNQTPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFQLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILHSHQGARYMESSLQKRPQFSFPDIFRSGKYDKISQNGNVKLEEEFIFSPQFAAPVAHGQELSSRALSLLSAQSQIPSRPSEENPLASSFSFHSISEMPLDISNEGKYVVDESFPCEMNHKEFIKSESAMLSDAGHPDHRASSDDICSPLEHGSTVDLFQLSSNLERVEQKRNSVLVKWENENSCFPAL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01957 448 Gene3D - 164 234 IPR036893 GO:0003677|GO:0005634
Adu05g01957 448 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
Adu05g01957 448 Pfam SBP domain 173 246 IPR004333 GO:0003677
Adu05g01957 448 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 56 444 - -
Adu05g01957 448 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 56 444 IPR044817 GO:0003677
Adu05g01957 448 SUPERFAMILY SBT domain 171 252 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01957 Adu-Chr5 70543328 70546844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01957 100 447 SBP-box Gene Family AT1G69170 39.062 3.83e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Adu05g01957 SBP 4.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01957 - - adu:107489502 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g01957 05 70543328 70546844 Adu05g01957 05 70543328 70546844 ECH