Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01900 ATGTTACACCACATTAACAGTAACTCATCCACAAAACAAAGAAAAAGGAAAAGGAAAATGGAAATGGATATGGAAAAGATGCAAAATCAAAGTGTGCATTTTGTTCTATCCACTGATGCAAAACCAAGGCTTAAATGGACTCCTGAGCTTCACCAAAGATTCATTGAGGCAGTTCATCAGCTTGGAGGTGCAGAGAAAGCAACCCCAAAGAGTCTTATGAGAGTGATGGGGATACAAGGACTTACTTTGTACCACTTGAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCACCAGCTAGAAACCTGTTCTGACAACCAACAAGAAGATTGCAGAAAAATCAAGAGCAGTCATGGTCATTGCAGCAAGGAAAACAGTGTTGGGGAACAGAAACAAGTCACTGAGAACATGAAGATAGCTCAGGCTCTCCATATGCAAATGGAGGTACAAAGGAAACTTTGTGAACAAATTGAGGTGCAGAAACATTTACAGCTTCGAATTGAAGCTCAAGGGAAGTACTTGCAATCGGTGTTAAAGAAAGCGCAAGAGGCGCTTCAAGGATACAATTCTTCCTCAATAGGACTAGAACTCACAAAAGCAGAACTCTCTCAACTAGTTACAGTAATCAACAATGCTTGTCCAGGTTCTCCAATCTCAGAACTCACAGAAACCAGAGGGTTAAGTTTGAGAAGTGATGACGAGAGGAAACAAGACAAGGGAACCATGTGCTCATTGGAGAGTTCTTTGACATCTTCTGAAAGCTGTGGGAGAAAGGAAGAGATACACCAGCCAATGGAAGAAGAAACAAGATGGAACTTGAAAAGTTTTAATGAAATTTCACTTGAATTTCCCTTTGAGGCATTTCATCAAACAGGTAAAGGGCAAAGTGGGGATGACTCGAGTAAAGAAGAAAGAGTGAGAAAGAGAAATGCAAAAACTGATTCTGAAGGTAGCTACTGTGTTGAGCAACCATCTGGGAAAAGATGTGGCAACAAATTGAGAAAACTTGAATTTGACTTAAACAACCAATATCACAATGACACGGACTCAAGATGA 1059 0.4023 MLHHINSNSSTKQRKRKRKMEMDMEKMQNQSVHFVLSTDAKPRLKWTPELHQRFIEAVHQLGGAEKATPKSLMRVMGIQGLTLYHLKSHLQKYRLGKSHQLETCSDNQQEDCRKIKSSHGHCSKENSVGEQKQVTENMKIAQALHMQMEVQRKLCEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALQGYNSSSIGLELTKAELSQLVTVINNACPGSPISELTETRGLSLRSDDERKQDKGTMCSLESSLTSSESCGRKEEIHQPMEEETRWNLKSFNEISLEFPFEAFHQTGKGQSGDDSSKEERVRKRNAKTDSEGSYCVEQPSGKRCGNKLRKLEFDLNNQYHNDTDSR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01900 352 Gene3D - 40 98 - -
Adu05g01900 352 MobiDBLite consensus disorder prediction 227 242 - -
Adu05g01900 352 Pfam MYB-CC type transfactor, LHEQLE motif 138 184 IPR025756 -
Adu05g01900 352 MobiDBLite consensus disorder prediction 224 244 - -
Adu05g01900 352 MobiDBLite consensus disorder prediction 289 329 - -
Adu05g01900 352 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
Adu05g01900 352 Pfam Myb-like DNA-binding domain 43 94 IPR001005 -
Adu05g01900 352 SUPERFAMILY Homeodomain-like 40 96 IPR009057 -
Adu05g01900 352 MobiDBLite consensus disorder prediction 297 316 - -
Adu05g01900 352 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 26 351 IPR044848 GO:0003700
Adu05g01900 352 Coils Coil 10 30 - -
Adu05g01900 352 MobiDBLite consensus disorder prediction 1 22 - -
Adu05g01900 352 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 26 351 - -
Adu05g01900 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01900 Adu-Chr5 58260258 58262322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01900 34 225 G2-like Transcription Factor Family AT1G69580 56.219 6.01e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Adu05g01900 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01900 - - gmx:100787178 427.172