Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01898 ATGGCATCCGAGCCTGACGTTTTCGAAAGATTTGTTAGAAACAGAGATATGACTCTGTTTTTGCCTTTCCTCTTTGGCTTCTCTGATTCTCAGTCTCGGGATTCTTCATCGCAAAACCAAGATAACGACGAAATGGGAGAAAGGATCGCCGATACTCCCAACCGAGAGAGGATCATACTAGTAAACCCCTTCACGCAAAGCATGGTTGTCATCGACGGCGCTTCAAGCCTCGAAGCTCTGTTTCGCGACATGGCCGTTAACAACAGCAGCAAAGCCGGAAGACCTCCAGCTACGAAGGAATCCATTGACGCCATGCCGAGCTTTGTAATCAAAGAAGGTGAAGTTGAAGTAGGAGAGTGTGTTGTGTGTTTGGAGGATTTTGGTGTTGGTGCTTTGGTTAAAGAGATGCCATGTAAGCACAGGTTTCATCCGAATTGCATTGAGAAGTGGCTTGGGATGCATGGAACTTGCCCTGTTTGCAGGTACGAGATGCCGGTTGAGGAAAAAGATGAAGGGAAGAAGAGGGATAGTGAAGGAGAAGAAGAACAAGAAGGAGGAGAAAGAGAGAGGAGAAGAATCGGTAATGGTGAAGTTTGGGTTAGTTTTTCTTTTAACAGGGGTATTAGTAGGAGACATAACGACGATCAGAATCACAATCAGAATCAAAATCAAGATTCTTCTGGTGGTGGTGATGATGATCCTAATTCGGGTGATTATGCATCATCAACTGCTGGAGGTGATGCTGAAGCAGAAAATTAG 759 0.4519 MASEPDVFERFVRNRDMTLFLPFLFGFSDSQSRDSSSQNQDNDEMGERIADTPNRERIILVNPFTQSMVVIDGASSLEALFRDMAVNNSSKAGRPPATKESIDAMPSFVIKEGEVEVGECVVCLEDFGVGALVKEMPCKHRFHPNCIEKWLGMHGTCPVCRYEMPVEEKDEGKKRDSEGEEEQEGGERERRRIGNGEVWVSFSFNRGISRRHNDDQNHNQNQNQDSSGGGDDDPNSGDYASSTAGGDAEAEN 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01898 252 SMART ring_2 120 160 IPR001841 -
Adu05g01898 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 173 - -
Adu05g01898 252 MobiDBLite consensus disorder prediction 30 51 - -
Adu05g01898 252 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Adu05g01898 252 MobiDBLite consensus disorder prediction 219 242 - -
Adu05g01898 252 SUPERFAMILY RING/U-box 104 166 - -
Adu05g01898 252 MobiDBLite consensus disorder prediction 207 252 - -
Adu05g01898 252 MobiDBLite consensus disorder prediction 167 194 - -
Adu05g01898 252 Pfam Ring finger domain 119 161 IPR001841 -
Adu05g01898 252 PANTHER - 12 173 - -
Adu05g01898 252 CDD RING-H2_PA-TM-RING 119 161 - -
Adu05g01898 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 167 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01898 Adu-Chr5 58252151 58253334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01898 10 214 C3H Transcription Factor Family AT1G26800 52.195 1.70e-62 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01898 - - adu:107489464 434.491