Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01883 ATGTTAAATGTTGATGTGATTGGGAACAAGAAAAGGAAGAGATGTGGGAGGGTTTTCAGGTTCAAGAACTTCGGCGAACCGGGTTACCCAGTTATGTTTACTGGTCCATTTCGTGAGAATGTGAATGCACTTCTTGAATATGCGAATTCGGAGAGTAACTTGGGAATGGGAATGCCAATGTGGTCTTTTCAGCTTGAAGTTCATCACCACCCTCCTTTGCATATTTTCTTGTTTGTGATTGAAGAACCAATTGAAGCTTCTTTGAATCGCCACTGCAAGCATTGTCAATATGTTGGATGGGGCCACCATTTCATTTGCAACAAGAAGTATCATTTCGTATTACCCTCGAAGGAGGCATTGGCTACATGCTCGAGTTGTGAAGGGTGCTGTGATGCTATTGCCACAATGAACAACAACAACAACAACAACAACAACAACAACAGTAATAATAATGGTAAGTCCAAATTAATAGAATTACAGGGCCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGCCATTTGCTATGTGTCAATGGCTTGGAAACCGGTTCCAATTTGGCTGGCAACCAGATCATGGACTTTTGGAATCGTTTGTGCATTGGATTGCAAGCAAGGAAAGTGAGTTTGAATGACACTTCACAGAAAAGAGGCATGGAACTTAGACTTATAAATGGAATAGCATATAGTGAGCCATGGTTCGGTCGTTGGGGCTACAAATTTGGTAGAGGTTCCTTTGGTGTGACACAATCCATGTACCAAAAAGCCATAGAAGCAATAAGGAGCATGCCACTCTACTTGCTGATACACCACATTGGCGCAAATAATTTCAACCACCACGAAGTGCCCGTCATTTTCTCACGCTACCAAACCCTGTCCGGCCAATCGCTAGTCACACTCGGCGACTTATTTCGCTACATGCTCGAGCTAAAGTCGCGCCTCCCGCGGGAGACTCGAGTTATTGGTAACAATAATTATAGTTGTTCCTACAACAACACTAGTAGTACTAGTGCCAGTGCATTGGTTGAGTCCAATAATAATTGCCGTTGGTCACCTAAGAGGATTGAAATGGCAACAAGGGTAATTGTTGAGGCATTGAAGAGAACAGAGTTTAGATGGATTTCAAGACAAGAAGTTAGGGATGCCGCACGTGCTTACATTGGTGACACTGGTTTATTGGATTTTGTGCTAAAGTCACTAGGGAATCATGTTGTTGGGAACTACTTGGTACGTAGGAGCTTAAATCCTGTTACCAAAGTTTTGGAGTATTGCTTAGAAGACATTTCCAATCATGTTTACCATAATTGCAATGAAGGTAGTTTGGCCATCAATAATAGTAATAGTAACAATAATAATAAAATTAAGGATAAGTACAAGATTTCAAGGGCTCAACTTATGAAGGACATGCTTTATTTGTATAAGTACATCCTAATTGACCCTAAACCAATGATGGGGTTGGAGTTTCTCTCAGCCATACCGTTGGCGGCTAGGATAATTCTCGACACCAAGTTTCTCGTCAAAGACTACTCTGGCGAGGTTCCGACTTTTGGAGTTGAGTTAGGCTCGGACGGAAAACTGAACCTTTATTGCACAATTTTGTTGCGGAACAATTCATGCATTGATGAGGAGTTCTTGAGTAAGGCTATGCCACCCTATGAGTGCATCACTTTGGGAAGCAATGCTACAATCAATGAATTGAAGTTAGAAGTTGAGAGGAATTTTAGGGAAATTTATTGGGGACTAAGGGGATTTGTGGTAGAATCAATTGGGAATTTTAGTGCCAATAATATTATTAGTAATAATGGGAAAGATATGGTTTTGGGGTTAATTGAAGTGATGGGTGGGAAAATAGTGTTAGAGGGTTGGATTGGTGAAATAATTGGAATGATGAATAACAACATGATGATTGGCCAAATGTGTGAGAATGATCCAAAGAATGGGATTGTGGAGTGCACTTGTGGAACAAAAGAAGATGATGGAGAGAGGTTGGTGTGTTGTGATATTTGTGAAACTTGGCAGCATACAAGGTGTGTTCGAATTCCTAATGATGAAGAAATTCCTCACATTTTTCTTTGCAAAAGATTGTTATGCCGCTTTAGGTCCAAGAATGCCTTCGACATTTAA 2127 0.4071 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVMFTGPFRENVNALLEYANSESNLGMGMPMWSFQLEVHHHPPLHIFLFVIEEPIEASLNRHCKHCQYVGWGHHFICNKKYHFVLPSKEALATCSSCEGCCDAIATMNNNNNNNNNNNSNNNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLETGSNLAGNQIMDFWNRLCIGLQARKVSLNDTSQKRGMELRLINGIAYSEPWFGRWGYKFGRGSFGVTQSMYQKAIEAIRSMPLYLLIHHIGANNFNHHEVPVIFSRYQTLSGQSLVTLGDLFRYMLELKSRLPRETRVIGNNNYSCSYNNTSSTSASALVESNNNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNHVYHNCNEGSLAINNSNSNNNNKIKDKYKISRAQLMKDMLYLYKYILIDPKPMMGLEFLSAIPLAARIILDTKFLVKDYSGEVPTFGVELGSDGKLNLYCTILLRNNSCIDEEFLSKAMPPYECITLGSNATINELKLEVERNFREIYWGLRGFVVESIGNFSANNIISNNGKDMVLGLIEVMGGKIVLEGWIGEIIGMMNNNMMIGQMCENDPKNGIVECTCGTKEDDGERLVCCDICETWQHTRCVRIPNDEEIPHIFLCKRLLCRFRSKNAFDI 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01883 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 706 IPR013083 -
Adu05g01883 708 SMART PHD_3 651 697 IPR001965 -
Adu05g01883 708 SUPERFAMILY FYVE/PHD zinc finger 636 695 IPR011011 -
Adu05g01883 708 Pfam PHD-finger 652 695 IPR019787 -
Adu05g01883 708 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 695 - -
Adu05g01883 708 CDD PHD_MMD1_like 651 695 - -
Adu05g01883 708 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01883 Adu-Chr5 57023931 57030738 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01883 10 694 PHD Transcription Factor Family AT5G22260 50.794 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Adu05g01883 PHD 5.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01883 - - adu:107489498 1355.12