Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01859 ATGCTTGCTAATCCAAAGGAGGCAAAAGCTGGAATCAGGGAGGTCCATTTTTTCCCTTTCAATCCTGGAGACAAGAGGACTACTCTAACTTACATTGAATCTGATGGAAAATGGCATAGATCCAGCAAAGATATTAAACCTCTGCAACTGCAAAGAGGATGTGAGGAGAAAGGCTATGCAACTATTGTTAAGTTTGCTGAGCGTAGGCTCCGATCTTTGGGGGTTGCTAGGCAGGAAGTACCTGAGAAATCAAAAGATGCTCATGGTGCACCATGGCAATTTGTTGCGCTGCTACCACTATTTGATCCTCCCAGGCATGATAGCGCTGAAACCATCACAAGAGCCCTGAACCTTGGTGTTAATCTTGCTATTGCCAAGGAAACTAGAAGAAGGCTTGGCATGGGAACAAACATGTACCCTTCATCCTCATTGCTTGGTCAAAGCAAGGATGCTGCAGTTTCATCTCTTCTAGTTGATGAGTTAATTGAGAAAGATGATGGATTTGCTAGAGTGTTTCCCAGTAGGGATAATATATATTTGAGCAGAGCTCATGTTCTGAGCAGAAGTATGGTGCAAATATGTAACCTGCAGCACACTTCCTCCTCAGAAACTTGCACGCCCCACACGCTAAGAGTAGCAGTTTCTAAAGAGGGAATAGCTTATTCTCTAACTGGTCTATCAGAGGATTATGGATTTGTTGAATTTCATTCACATGCCACAGTTGAGAAGGTTTTACAAAGTTATACTGAAATTTTGATGCCGAACACAGAGCAACCTTTCTGCCTGAACTGGGCGACATTTAGTACAGGAGAGAAGTCCTCAGACAATGTTCCTGATCTTTTTATTTTTGTAGGAGATTTAGCTGCAGATATTACAGATAGTTTGTTGCATGAAATGTTTGCTAGTGTGTTTCCTTCTGTTAAACCTGCAAAAGTTGTCTTTGTTGCCAATACTGGCCGTTCAAAGGGCTATGGCCTATGTGTATTGGCACTGCAACTCCAAGGAAATCATCTGGCCATCAAGATATTTGTTGGAGGACTCGACCCTAATGTTACAGATGAAGATCTTAGGCAGCAATTCTCTCAGTATGGTGAGATAGTATCTGTTAAGATACCTGTTGGAAAGGGGTGTGGTTTTGTCAAATATGCAATCAGTTTAGAATGGACTTTGGTGGCAACCACTAGAGTGGCACCTATTACGGAGCCCCTGTTTATGATGGTTATGGATATGCATTGCCTTCTCCTCATGATCCAAGCATATATGTTGCTGCCTACGCTGCTTATCCTATCTATGGAGGCCACCAACAACAAGTAA 1314 0.4254 MLANPKEAKAGIREVHFFPFNPGDKRTTLTYIESDGKWHRSSKDIKPLQLQRGCEEKGYATIVKFAERRLRSLGVARQEVPEKSKDAHGAPWQFVALLPLFDPPRHDSAETITRALNLGVNLAIAKETRRRLGMGTNMYPSSSLLGQSKDAAVSSLLVDELIEKDDGFARVFPSRDNIYLSRAHVLSRSMVQICNLQHTSSSETCTPHTLRVAVSKEGIAYSLTGLSEDYGFVEFHSHATVEKVLQSYTEILMPNTEQPFCLNWATFSTGEKSSDNVPDLFIFVGDLAADITDSLLHEMFASVFPSVKPAKVVFVANTGRSKGYGLCVLALQLQGNHLAIKIFVGGLDPNVTDEDLRQQFSQYGEIVSVKIPVGKGCGFVKYAISLEWTLVATTRVAPITEPLFMMVMDMHCLLLMIQAYMLLPTLLILSMEATNNK 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01859 437 Gene3D - 102 174 IPR023214 -
Adu05g01859 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 342 383 IPR000504 GO:0003723
Adu05g01859 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 327 IPR000504 GO:0003723
Adu05g01859 437 PANTHER CALCIUM-TRANSPORTING ATPASE 1 176 - -
Adu05g01859 437 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 5 107 IPR023299 GO:0000166
Adu05g01859 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 340 382 IPR000504 GO:0003723
Adu05g01859 437 SMART rrm1_1 342 411 IPR000504 GO:0003723
Adu05g01859 437 SMART rrm1_1 281 341 IPR000504 GO:0003723
Adu05g01859 437 Gene3D - 194 266 IPR012677 -
Adu05g01859 437 PANTHER PLASMA MEMBRANE ATPASE 1 176 - -
Adu05g01859 437 SUPERFAMILY RNA-binding domain, RBD 340 383 IPR035979 GO:0003676
Adu05g01859 437 SUPERFAMILY RNA-binding domain, RBD 225 327 IPR035979 GO:0003676
Adu05g01859 437 Gene3D - 281 330 IPR012677 -
Adu05g01859 437 Gene3D - 2 101 IPR023299 GO:0000166
Adu05g01859 437 Gene3D - 336 387 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01859 Adu-Chr5 53199356 53204087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01859 1 173 Primary Pumps ATPases AT2G24520 68.449 4.91e-77 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01859 K01535 - gmx:547525 259.996