Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01858 ATGGCCTTTTCACCCACTGAAGAAGGATCAATTACTACATTCACCAATCCAACACTAGGCGATGAACAATTTAATGTGGATGAATTAGACATTCAAGAACAAGTAGGGTACAATTTCGACGAAATTACCGATGTCGTTGTGACTAGAAAGGATGAGCTGGACGATGGAGGCCAGTTGCCGGATCATAGTGGCGTAGGTGAAGAGGAAATTCCAGTCGTAGGAATGAGTTTTGGTTCGTTGCCTCTCGCACAGAAATTTTATGCAAACTATGCAAAGAAAGTTGGGTTCGTTACTAAAATCAGGAACACGAATTTTGACAAGACGCGGAAGGAATCAAAGGTACCGGTTAATCAATCTATTTACTGCACGCGTGAAGGTTATCGAGAGTCTAGGGTGAACGCAGCAACTCGAGCAAATAGAATTACAGCCACGAGATGCAAAGCAACGAATCCAAGGATGTATGTCGTGCTGGACAATGAGAATGAATGTTGGGTTGTGTCTAGATTAGAACTGAGGCATTCTCACCCTTGTTCGGCTGAGAAAGCTGTCCATTATCATGAGTACCGGGAGCTGACCATGCATGCTAAGTGCGTCATTACGGATAACGACGAGGCTGGAATAAGACCCAACAAGATGTATCTAGCCCTAGCAAACGaggttggtggaagaaacagGCATGGTCTGCCGTTTGCATCCTTTGTAGGTGTAAACCACCATGAGAAGTCTACTCTTCTTGGCTGTGCTTTACTTGGGAGCGAGGAGATCCCTAATTTTGAGTGGGTTTTCACGCAGTGGGAAGCACGGGCATTGAGAGACAGTTTCAGCAGAAAAAAAGGAGATACAATTTCTATTACGGTGGATGAGCAGAAGTTTTTCTGGGGGAAGCCAGTCTACCATAGTTTTAGGGTCGACTATGACCCTTTGAGTCAAAAGGGTCAGTGCGAGTGCAACAAGTTTGAATCCGCTGGTATATTGTGTTGCCACACCCTTGCGGTCTGGTCATACTACAGAGTTGACATAGTACCGAGCTGCTACGTTCTTCCTCGATGGAGTAAGAATGTCATCCGCAAGCACACTTATGTCAAGAGTAGCCATGACGTGGCTCGGAGTGATGAAAGCAACAACTTGTTCAGGCATCTGTGTTCAGAGTTCTATAACGTTGCACAGAAGTTTGTTGCTTGTGATGAGGAAGCAGCCATCTTGCGAGCTGCCCTTTCGGATGCAAAGTCCAAGCTGATTGATTACCGTGCCAGCATGCGTTCCACTACTGCTGCTACGTCTCAGAATACCGTGCCCACACAGAGCACAGGCGGTGCGATTGTACATGACATTCAGGGACCCTCAAGAGTCAAAACCAAAGGACGACCTAAGGGTAAGAGACTTGGAGCAGAGTTGGACAAGTCAATTAAGAAATCAATGCAAAAATGGAATAGGAAATCTCACCTGgatgaggttgacctcccgtcagataatgatcgttatggGCTGGAGAAGTCGATGATAACAACAACAGACGACACAGGTGCACCAGCAAGTTTAGGCGGCGCTAGAAAAACCCACATGCAACGGCATGTGAGGCGTCGCTCTTCTTGCTATAATGGAGGCGCGATCGTCGGAGAGGCTCGTCACGGCGTCAGAGCGGCTGATGAAGTGAGGGGAGAAGGTTGGGCATAG 1674 0.4546 MAFSPTEEGSITTFTNPTLGDEQFNVDELDIQEQVGYNFDEITDVVVTRKDELDDGGQLPDHSGVGEEEIPVVGMSFGSLPLAQKFYANYAKKVGFVTKIRNTNFDKTRKESKVPVNQSIYCTREGYRESRVNAATRANRITATRCKATNPRMYVVLDNENECWVVSRLELRHSHPCSAEKAVHYHEYRELTMHAKCVITDNDEAGIRPNKMYLALANEVGGRNRHGLPFASFVGVNHHEKSTLLGCALLGSEEIPNFEWVFTQWEARALRDSFSRKKGDTISITVDEQKFFWGKPVYHSFRVDYDPLSQKGQCECNKFESAGILCCHTLAVWSYYRVDIVPSCYVLPRWSKNVIRKHTYVKSSHDVARSDESNNLFRHLCSEFYNVAQKFVACDEEAAILRAALSDAKSKLIDYRASMRSTTAATSQNTVPTQSTGGAIVHDIQGPSRVKTKGRPKGKRLGAELDKSIKKSMQKWNRKSHLDEVDLPSDNDRYGLEKSMITTTDDTGAPASLGGARKTHMQRHVRRRSSCYNGGAIVGEARHGVRAADEVRGEGWA 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01858 557 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 222 265 - -
Adu05g01858 557 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 299 476 - -
Adu05g01858 557 SMART 26again6 312 339 IPR006564 GO:0008270
Adu05g01858 557 MobiDBLite consensus disorder prediction 425 459 - -
Adu05g01858 557 Pfam FAR1 DNA-binding domain 85 177 IPR004330 -
Adu05g01858 557 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 222 265 IPR031052 GO:0006355
Adu05g01858 557 MobiDBLite consensus disorder prediction 503 527 - -
Adu05g01858 557 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 69 220 IPR031052 GO:0006355
Adu05g01858 557 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 299 476 IPR031052 GO:0006355
Adu05g01858 557 MobiDBLite consensus disorder prediction 425 441 - -
Adu05g01858 557 ProSiteProfiles Zinc finger SWIM-type profile. 301 337 IPR007527 GO:0008270
Adu05g01858 557 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 69 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01858 Adu-Chr5 53165958 53178550 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Adu05g01858 FAR1 9.3e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01858 - - adu:107483039 427.557