Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01828 ATGGACCACCATACGAGTGGCAAGTGTACAAAATTCTTGGTGGCAGTCATGGTGTGCCTCAAGTACATTACAAGGGCAGACATCGATTATTTGGGACAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCTAAGTCCAAAGTTACACTTGCTATAAAGCAGTTAAAAGCCCAACACCACTTGATATTGAGTGGGACTCCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTAGATTTCTTGGAACAGAGAGACAGAAACAAACGGCGCCGTTAACGCCATCATCCATCGTCCTCCAAGGCTCCAACAACACCATGACGACGACAATCGTACTCTCGCTTCACTTCTTGCTCCCTCAGAACCCAAAACCCTTCCAAAACCCTTATTTTATCCTGAAAACTCACCCTTTTAAATTCAGACCCCAATGTTCCCGGGAAACAAACACCGCTGCTTCCTCCACCGACCGTGGCCTTTTTTTCCAGGAAAAAGTTCAGTACCTCAAGAATCTCAAAGTGAACCACAGAAATCTTTCCAAGTAA 576 0.4358 MDHHTSGKCTKFLVAVMVCLKYITRADIDYLGQLLWNYCILDEGHIIKNAKSKVTLAIKQLKAQHHLILSGTPIQNNIMDLWSLFDFLMPRFLGTERQKQTAPLTPSSIVLQGSNNTMTTTIVLSLHFLLPQNPKPFQNPYFILKTHPFKFRPQCSRETNTAASSTDRGLFFQEKVQYLKNLKVNHRNLSK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01828 191 Gene3D - 2 131 IPR038718 -
Adu05g01828 191 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 23 97 IPR044972 GO:0003677|GO:0016887|GO:0017025
Adu05g01828 191 Pfam SNF2-related domain 33 95 IPR000330 GO:0005524|GO:0140658
Adu05g01828 191 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 91 IPR014001 -
Adu05g01828 191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 107 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01828 Adu-Chr5 48888890 48892961 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01828 26 95 RAD5 or RAD16-like Gene Family AT5G22750 45.714 4.65e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu05g01828 SNF2_N 4.7e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01828 K15192 - adu:107469552 202.601