Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01772 ATGTTGGGAATGAATAATCCTGTTGATTTGGTGGAGAAAATCACTCCCTGGAGGGAATCATGGAAGGTGCATGTTAAAGTTGTGAAGTTGTGGTACCAGAAGAATACTGCTTTGGATCCTTCTCAAAATCTGTTGCATATGGTCTTAATGGATGAGAAGTTACACAAGATCCAAGCTACCATTAGAGATGAGCTTATATCAAAGTTTGCTGTGTCTCTAAATGAAGGTGATCTGTATTTGATAACCAATTTTACAGTTTTGCCAAACAGTGGTTTGAACAGAGTTACCAAACATCGGTTCAGGCTTTTGTTCCAATACAAGACCTCTGTTGTTTCTGTGGTGTCTCCAAGGATAACTCATTCCGGGTTGTGTTTTACATCAATAGATGAAATTGATCAAATGACAAAGGACCACAATTTCCTTATTGACTTTGTTGGGATCATTACTGGTGTTCGAAAGGAAAGAGATGTAGCATCATATGGGAAGCTCATCAAAGCAGTTGTGCTAGAAGTTTTTAGTCATGGGAAAAAGGTCCAATGCAATGTGTTTGGAAATGCTTGTGATCTCTTGGAATATGAAAACTTACAAAAATATCCAAGATCTCCACTGATTGTCCTTGAGTCCTTTAAAATCAAAGCAATTGAAGGTGGAGTAATTCTACAGAATGTGATCAATATCTCTAGATTATTCATTAATCCAGACATTCCTGAGTCTGTTGAGTTCCTAAGCAGATTTAGTGTAGCCAGTTATGGATTCTCAAGACTTGTGAACAATGACCTTGGATACTTAATTTCTAAAGTTGATGGTGATTATTTCAATCCCAAAGAGATCAGTAGTATTCAAGATCTTGATGTAGATAACAGGGATGCTCATTACTTTGTAATGGGGACAATTAAGGAAGTTATGGATGAACCAGATTGGTGGTACTACTCATGTGTATGTGGTCATCCTGTTGTTGACCATGAGGATCTCTACCTTTGTGATGCTTGTTGTTCATGTGTTGAACATGTTATGCTCAAGTATAGGATTCGGGTAAAGATTCACCATGCTGGGTGTGATGTTTTGTTTGTTCTGCTTGATAATGCGGCAACAAAACTATTTGGAAAAACCTGTTCTGAAGCATTTCTCAGGATAGACGAAGAATTCCCTCTTGATCCTAGTGTGCTTGCAGTCTGTCGGTCATATTCTCCACAAATGTTTGGTGATGTTGTTGGAGAGCATAAAGTTTTCAAGGTTGAAATTCTTCCTGTGGTTGATCCAGATTACTTCGGGTCCTTTAAAATTGTAAATGTGTTTAGTGATAATTCTGAACCAGCTACAAGTGATGATTATATGAATGCAAGGCTTCATGATCCGATTTTTCCACCAATCTACGATGCCTGTTTGCAGTATGGAATTGGGGAAGATTACAAGACTCAAGTAGTTTGTGATAATTCTATTCAATCAGAAACTATTGAAGATATTATTACTGATCTTATTTCACCTAATCGCTGTTATTCTGATGTTGAGAATGGTGGTTTTGTTTTCATTCTTGGAACTATATCATCTGTTTTCAAGAATCATAAGTGGTGGTTCTCAACTTGTTTATGTGGTTCTCTTGTGTCAACTAATAAACAAATTTTATCATGTGATCTATGTCAGCTTCAATGTATTGATGCTGTTCCAAGATTCTGCTTGAAGATTGTAGCTTCTCATGCAAATGGCAACAATATATTTGTTCTCAAAGATCGTGAGGTTGTGCAACTGATAAAGACAAGATGCTCCACCTTTTTGGATAGACACCCAGAGTTGAATCAGGAATCTTATTGCAAAGTTGTTCCATTGAAACTCATTTCAAGTCTTTTACACAAAAAAGTTGTGTTCATGGTTGATGCTAGGCCTGTGGGTTATGAGATGAATCGATCTGTGTATATTGTTTAA 1920 0.3698 MLGMNNPVDLVEKITPWRESWKVHVKVVKLWYQKNTALDPSQNLLHMVLMDEKLHKIQATIRDELISKFAVSLNEGDLYLITNFTVLPNSGLNRVTKHRFRLLFQYKTSVVSVVSPRITHSGLCFTSIDEIDQMTKDHNFLIDFVGIITGVRKERDVASYGKLIKAVVLEVFSHGKKVQCNVFGNACDLLEYENLQKYPRSPLIVLESFKIKAIEGGVILQNVINISRLFINPDIPESVEFLSRFSVASYGFSRLVNNDLGYLISKVDGDYFNPKEISSIQDLDVDNRDAHYFVMGTIKEVMDEPDWWYYSCVCGHPVVDHEDLYLCDACCSCVEHVMLKYRIRVKIHHAGCDVLFVLLDNAATKLFGKTCSEAFLRIDEEFPLDPSVLAVCRSYSPQMFGDVVGEHKVFKVEILPVVDPDYFGSFKIVNVFSDNSEPATSDDYMNARLHDPIFPPIYDACLQYGIGEDYKTQVVCDNSIQSETIEDIITDLISPNRCYSDVENGGFVFILGTISSVFKNHKWWFSTCLCGSLVSTNKQILSCDLCQLQCIDAVPRFCLKIVASHANGNNIFVLKDREVVQLIKTRCSTFLDRHPELNQESYCKVVPLKLISSLLHKKVVFMVDARPVGYEMNRSVYIV 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01772 639 CDD RPA1_DBD_B_like 143 245 - -
Adu05g01772 639 PANTHER REPLICATION FACTOR A 1, RFA1 23 375 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu05g01772 639 Pfam Domain of unknown function DUF223 47 139 IPR003871 -
Adu05g01772 639 SUPERFAMILY Nucleic acid-binding proteins 502 624 IPR012340 -
Adu05g01772 639 SUPERFAMILY Nucleic acid-binding proteins 272 412 IPR012340 -
Adu05g01772 639 SUPERFAMILY Nucleic acid-binding proteins 125 247 IPR012340 -
Adu05g01772 639 Gene3D - 118 251 IPR012340 -
Adu05g01772 639 Gene3D - 267 418 IPR012340 -
Adu05g01772 639 Gene3D - 473 639 IPR012340 -
Adu05g01772 639 CDD RPA1_DBD_A_like 22 110 - -
Adu05g01772 639 Gene3D - 7 114 IPR012340 -
Adu05g01772 639 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 23 375 - -
Adu05g01772 639 SUPERFAMILY Nucleic acid-binding proteins 10 113 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01772 Adu-Chr5 44279736 44283227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01772 2 371 Core DNA Replication Machinery Family AT5G08020 20.205 9.41e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01772 - - ahf:112695694 1296.18