Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01728 ATGGATATTGAGGAAGAATCAGTGGGTGTTAAAAAGGCATGTCCAACACGAGGTGTTAAGAGAAGTCGTTCAGCCGAAGTACATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTGCAAGATCTCATACCAAACTGCAATAAGGTTCGCTTGTTTATACTTTCAAACCTTGAGCCATATTTGCTTCTCCTTGAGCCGAAAATGCAACCAGAGAAACAGAGAAATGAAACAAAGAGGCAGGAAGCATGGCAAGTATATGGGGCCTTGTTGTGTGCTGTTGGGCAATGTATGCATGAAAAGGCCAAAATCTTCAACAATTTGCTCTCTCCTCCAACACGTGCTTCTTCTAGATCCAAAGCCATGATTGCTATGTCAACCGGCTTGATAGAAATTCCCTGA 420 0.4286 MDIEEESVGVKKACPTRGVKRSRSAEVHNLSERRRRDRINEKMRALQDLIPNCNKVRLFILSNLEPYLLLLEPKMQPEKQRNETKRQEAWQVYGALLCAVGQCMHEKAKIFNNLLSPPTRASSRSKAMIAMSTGLIEIP 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01728 139 Gene3D - 19 80 IPR036638 GO:0046983
Adu05g01728 139 PANTHER TRANSCRIPTION FACTOR PIF3 2 56 IPR044273 GO:0003700|GO:0006355
Adu05g01728 139 Pfam Helix-loop-helix DNA-binding domain 27 78 IPR011598 GO:0046983
Adu05g01728 139 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 23 80 IPR011598 GO:0046983
Adu05g01728 139 PANTHER TRANSCRIPTION FACTOR PIF3 2 56 - -
Adu05g01728 139 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 22 72 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01728 Adu-Chr5 38061493 38063291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01728 2 76 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 65.000 3.61e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu05g01728 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01728 K12126 K03131 ahf:112696927 236.113