Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01671 ATGAGTGAAATACCGTCTATCTTCTCAAGAGCAAGTGAGAAACAAAGAAGAGAGCAACTGAATGGCAAATACAAAATCCTGAGGAGTGTTATCCCAAGCCCCACAAAGATGGATAGAGCCTCTGTGGTGGGTGATGCCATTAAATATAATAAGGGAGCTGCTCAGAACGGTCTTAACCAGAATTCGATACTACAACTATCACGTGGCTTTCCTGTGGGGAAATCTTCTGGTTCTAAGCCTGGTGTTGCTGTGGTTGTCGAAAGAGTTAGGATACGCGGACTGTCAAGGTTTAGAAACCTGAGTAAATTTGCGCACTCCATGAAAGTGAAGGTGTTGCCTGTAGATCCAAATGTTCGCATTCCAAATAGATATCTGTTTCCATATGTGTGTATTTGTGAAGCCTATCTGCTTTTGAAGAATCTCTTTGTGCACGGCATGAATATGTATTTGATCAATGAGGCAGCTGAAACCATCAACAAAGGCGAATTCATAATTGAGCATATTGGAGAAGTAATTGATGACGCTTTATATGAAAAAAGGCTTTGGGACATGAAATATGGGGGTGTACAGAATTTTTACATATGTGAGATTCGTAAAGATTTTACTATAGATGCAACCTTCAAAGGAAATATGGCTTGCTTCTTAAACCATGGTTGTGATCCTAATTGTGTTCTCGAGAAGTGGCAAGTAGATGGTGAAACGCGAGTTGGTGTATTTGCTTCCCATACAATAGAAATGGGAGATCCCTTGACATATGATTACAGACCTGAGGTAAAATACCAATGTGGTGCCCCAAATTGTCGAGGGATTTTAGGGGTGAAAAAGAAAATTGTGAAGTTAGATATTTGTTGGGGTTGGGGATCAAAGCATAAGAGAACTTCAGCTGCATACAAACGACTAGATGACATTGCTGGGAGTGCATATTATGTTGCACCAGAGGTACTTCACAGGTCCTATAGTGTGGAAGCAGATATATGGAATCAGaagtactctggagtgagcaacagagcagtgtaa 1017 0.3933 MSEIPSIFSRASEKQRREQLNGKYKILRSVIPSPTKMDRASVVGDAIKYNKGAAQNGLNQNSILQLSRGFPVGKSSGSKPGVAVVVERVRIRGLSRFRNLSKFAHSMKVKVLPVDPNVRIPNRYLFPYVCICEAYLLLKNLFVHGMNMYLINEAAETINKGEFIIEHIGEVIDDALYEKRLWDMKYGGVQNFYICEIRKDFTIDATFKGNMACFLNHGCDPNCVLEKWQVDGETRVGVFASHTIEMGDPLTYDYRPEVKYQCGAPNCRGILGVKKKIVKLDICWGWGSKHKRTSAAYKRLDDIAGSAYYVAPEVLHRSYSVEADIWNQKYSGVSNRAV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01671 338 Pfam Helix-loop-helix DNA-binding domain 11 49 IPR011598 GO:0046983
Adu05g01671 338 Pfam SET domain 183 254 IPR001214 GO:0005515
Adu05g01671 338 Gene3D - 9 62 IPR036638 GO:0046983
Adu05g01671 338 ProSiteProfiles SET domain profile. 127 255 IPR001214 GO:0005515
Adu05g01671 338 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 153 297 - -
Adu05g01671 338 SUPERFAMILY SET domain 154 269 IPR046341 -
Adu05g01671 338 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 153 305 IPR025787 -
Adu05g01671 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 49 IPR036638 GO:0046983
Adu05g01671 338 SMART set_7 144 261 IPR001214 GO:0005515
Adu05g01671 338 SMART finulus 10 61 IPR011598 GO:0046983
Adu05g01671 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 53 IPR011598 GO:0046983
Adu05g01671 338 Gene3D SET domain 151 281 IPR046341 -
Adu05g01671 338 PANTHER SET DOMAIN PROTEINS 153 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01671 Adu-Chr5 32584215 32590045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01671 154 271 C2H2 Transcription Factor Family AT2G23740 35.417 8.16e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Adu05g01671 SET 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01671 - - aprc:113859744 237.269