Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01619 ATGAAGAGGTCTAGGGACGATATTTTCGCGAGTCCTCAACTTAAACGGCCTATAGTGTCTTCTCGAGGAGAAGCGTCCGGGCAACCCCAGATGATGAATGGAGGTGCTGTTATTCAGAAGCTAACTACAAATGATGCATTGGCATATCTCAAGGCAGTGAAGGATATATTTCAGGATAAGAGGGACAAGTATGATGACTTTTTGGAAGTCATGAAAGATTTTAAGGCTCAAAGAGTTGATACTGCAGGCGTGATAGCAAGGGTTAAACAGCTCTTTAAAGGGCACAGAGACTTGCTTTTGGGATTCAACACCTTCTTGCCAAGGGGTTATGAAATCACACTTCCACTGGAGGATGAACAACCTGCCCCAAAGAAGCCTGTTGAATTTGAAGAAGCGATTAATTTTGTGAACAAAATTAAGACCCGGTTTCAAGGTGATGATCGTGTTTACAAGTCATTTCTGGACATATTAAATATGTACAGAAAGGAAAGCAAGTCTATAACAGATGTCTACCAGGAGGTTGCTGCACTTTTCCAAGAGCATCCGGATCTTCTTGATGAGTTTACTCATTTTCTCCCGGACACTTCCTCAGCAGCCTCTGCTCATTATATTTCTGCTAGAAATTCTATGCTTCGTGATAGGAGCTCTGCAATGCCAACTGTACGGCAAATGCATGTTGAGAAGAGAGAAAGGACTATGACCTCACATGGTGATCGTGACCTCAGTGTTGACCGTCCTGACCCTGATAATGACAGAGGTTTGATGAGGGCAGAAAAGGATCAGAGGAGACGTCTAGAGAAGGATAAGGAATGCAGAGAGGAGAGAGATAGGAGAGAACGTGACAGAGATGATAGAGATTATGAGCATGATGGTGGTCGAGATAGGGAAAGGTTCTCCCATAAACGGAAATCTGATCGTAGGGCTGAAGACTCTGGAGCCGAACCATTGCTCGATGATGAACATATTGGTATGCGCCCTATGCCATCCACTTGTGATGAAAGAAATACTCTGAAAAGCATGTATAGCCAGGAGCTTGCTTTCTGTGAAAAGGTCAAAGAGAAATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGTTTGCATATTTACAGCAGGGAAATAATTACCAGACATGAATTGCAGTCATTGGTTGGTGATTTACTGGGGAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGATACAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTATGGAGTGACGGACAAAGGCCGAAATCTGTGAAGGTTGAAGACAGAGATCGTGATCGAGACCGTTGTAGGGATGATGGCATGAAAGAAAGGGATCGTGAATTCCGAGAAAGGGACAAATCCACTGCCCCCGCCAACAAGGATGTTTCAGGTCCTAAGATGTCCATATATCCCAGCAAGGATAAGTATTTGTCAAAGCCTATAAATGAGCTGGACCTTTCTAACTGTGATCAATGCACTCCGAGCTATCGTCTATTGCCAAAAAATTACCCAATACCTGTAGCTAGCCAGAGAACAGAACTTGGTGCAGAAGTATTAAATGATCACTGGGTGTCTGTTACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTCAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGCTAGAGTCTGTAAATGCAACTACTAAGCGAGTGGAAGAGCTATTAGAAAAGGTCAATAATAATATAATCAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTAACAGCCTTAAATCTTAGGTGCATTGAACGATTATATGGTGACCATGGGCTAGATGTGATGGATGTGTTACGGAAAAATGCATCTCTGGCTTTGCCAGTGATATTAACCCGCTTGAAGCAGAAACAAGATGAATGGGCAAGGTGTCGTGCTGATTTTAATAAAGTCTGGGCTGAAATATATGCCAAAAATTATCATAAATCTCTTGATCACCGTAGCTTCTACTTTAAACAACAGGATACAAAAAGCTTGAGTACTAAAGCATTACTGGCCGAAATCAAAGAAATCAGTGAGAAGAAACGCAAAGAAGATGATGTTCTTCTTGCGATTGCTGCTGGAAATAGACGTCCTGTTCTTCCAAACCTTGAGTTTGAGTACACTGATTCTGATATTCATGAAGATCTGTATCAGCTTGTAAAATATTCTTGTGGAGAAATGTGTACAACTGAACAATTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCATTCTGTGTGTTCCTTCTCGGCCTCTGGGTGCCGAGGATACAGAAGATGTTGTCAAGGATAAGAATAATTCTGCCAAAAGTGGCACTGCAAGTGTTGCCGAGAGTGAGGGTAGTGCTGGTGCTGGTGCTATTGTAGTGAATCCTAAGCATATTAACACTTCTAGAAATGGGGATGAGTGTATGCCATTAGATCAATCAAATTCTAGCAAAGTATGGCAATCAAATGGTGACAGTGGTGCAAAAGATGATAAATGTCTTGATTCAGACCGCACTCTGCATAAAACTGAAACTTCAGGCACTAATACACAGCATGTTAAAATTAATACTAGTTCATTCACACCCGATGAAATGTCAGGAGTCAATAAGCAAGACCACTCCAGTGAGCGGTTGGTGAATGCTAATGTTTCACCAGCATTAGGAGTGGAGCTAAGTAATGGAAGAACAAGCATGGATAATGCATCAGGAATCATTGCCACTAATCCGTCTAGACCTGGTAATATTTCTGGCGAAGGTGGAGTTGATTTACCTTCATCAGAGGGTGGTGATTCTACCAGACCAGGTACATCCACAAATGGGACCATCACAGAAGGGACCGAAGTTCACAGGTACCCAGAAGAATCAGTTCGGCAGTTAAAAAGTGAAAGAGAAGAGGGCGAGTTGTCCCCAAATGGAGACTTTGAAGAGGATAACTTTGCTGTTTATGGAGATACTGGTTTGGATGCAGTCCATAAGGGGAAGGATGGCGGTTCGAGTCAGCAATACCAAAACAGAAATGGAGAACAAGCTTTAGGTGAAGTTAGAGGAGAGAATGATGTTGATGCTGACGATGAAGGTGAGGAAAGTCCACACAGGTCATCTGAGGACAGTGAGAATGCTTCCGAGAATGTTGATGTTTCTGGAAGCGAGTCTGCTGATGGTGAGGAATCCCGAGAAGAGCACGAGGATGGGGAAAATGATAACAAAGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCCCATGATGTTGAAGGAGATGGAACCTCCTTGCCATTTTCAGAGCGCTTCCTATTAACTGTAAAGCCACTGGCGAAGCATGTTCCCCCAGCGTTACATGAGAAAGAAAGGACTTCTCGAATTTTTTATGGAAATGATTCCTTTTACGTCCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCTGCTGAAAGGAAATGGGGGGCTTCAAATAATACGGGTTCTACTGATCAATACAACAGGTTCATGAATGCGCTCTACAATTTGCTGGATGGTTCATCTGATAATACAAAATTCGAGGATGATTGTCGAGCCATTATTGGAACTCAGTCATATCTCTTATTCACTTTAGACAAGCTGATTTATAAGCTTGTTAAACAGCTTCAAAATGTTGCCACTGATGAGATGGATAACAAGCTTCTCCAATTATATGCCTATGAGAAATCAAGAAAACCAGGAAGATTTGTTGACGCAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGAAGAGAACATATACCGAATTGAATATTCACCTGGACCTAAGAAATTGTCTCTTCAACTGATGGACTATGGACATGATAAGCCTGAAGTGACTGCCGTGTCAATGGACCCCAACTTTTCAGGCTATTTGTACAACGAATTTTTTTCTGTTGTCTCTGACAAAAAGGAAAAGTCTGGAATTTTCTTGAAGAGGAACAAACGTAGATATGCCTGTGGTGATGACATTTCAAGCGAGGCTGTGGAAGGACTACAAGTTATTAATGGTCTTGAGTGTAAGATATCCTGCAGTTCATCCAAGGTGTCATATGTTTTAGATACGGAAGATTTTTTGTTCCGGAAGAGAAAGAATAGGGCAAAGTCTTTAACCATTAGTTCGAGAAGAGCACAACGGTTCCACAAATTGTTTTCCCTTGCATGCTGA 4257 0.4156 MKRSRDDIFASPQLKRPIVSSRGEASGQPQMMNGGAVIQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRVDTAGVIARVKQLFKGHRDLLLGFNTFLPRGYEITLPLEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDRVYKSFLDILNMYRKESKSITDVYQEVAALFQEHPDLLDEFTHFLPDTSSAASAHYISARNSMLRDRSSAMPTVRQMHVEKRERTMTSHGDRDLSVDRPDPDNDRGLMRAEKDQRRRLEKDKECREERDRRERDRDDRDYEHDGGRDRERFSHKRKSDRRAEDSGAEPLLDDEHIGMRPMPSTCDERNTLKSMYSQELAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRHELQSLVGDLLGKYPDLMEGFNEFLIQSEKNDGGFLAGVMNKKSLWSDGQRPKSVKVEDRDRDRDRCRDDGMKERDREFRERDKSTAPANKDVSGPKMSIYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATTKRVEELLEKVNNNIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPVLPNLEFEYTDSDIHEDLYQLVKYSCGEMCTTEQLDKVMKVWTTFLEPILCVPSRPLGAEDTEDVVKDKNNSAKSGTASVAESEGSAGAGAIVVNPKHINTSRNGDECMPLDQSNSSKVWQSNGDSGAKDDKCLDSDRTLHKTETSGTNTQHVKINTSSFTPDEMSGVNKQDHSSERLVNANVSPALGVELSNGRTSMDNASGIIATNPSRPGNISGEGGVDLPSSEGGDSTRPGTSTNGTITEGTEVHRYPEESVRQLKSEREEGELSPNGDFEEDNFAVYGDTGLDAVHKGKDGGSSQQYQNRNGEQALGEVRGENDVDADDEGEESPHRSSEDSENASENVDVSGSESADGEESREEHEDGENDNKAESEGEAEGMADAHDVEGDGTSLPFSERFLLTVKPLAKHVPPALHEKERTSRIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWGASNNTGSTDQYNRFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQNVATDEMDNKLLQLYAYEKSRKPGRFVDAVYHENARVLLHEENIYRIEYSPGPKKLSLQLMDYGHDKPEVTAVSMDPNFSGYLYNEFFSVVSDKKEKSGIFLKRNKRRYACGDDISSEAVEGLQVINGLECKISCSSSKVSYVLDTEDFLFRKRKNRAKSLTISSRRAQRFHKLFSLAC 1418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01619 1418 MobiDBLite consensus disorder prediction 949 965 - -
Adu05g01619 1418 Gene3D Paired amphipathic helix 45 107 IPR036600 GO:0006355
Adu05g01619 1418 ProSiteProfiles PAH domain profile. 337 406 IPR003822 GO:0006355
Adu05g01619 1418 Coils Coil 255 275 - -
Adu05g01619 1418 MobiDBLite consensus disorder prediction 211 331 - -
Adu05g01619 1418 MobiDBLite consensus disorder prediction 430 466 - -
Adu05g01619 1418 ProSiteProfiles PAH domain profile. 125 195 IPR003822 GO:0006355
Adu05g01619 1418 SUPERFAMILY PAH2 domain 39 108 IPR036600 GO:0006355
Adu05g01619 1418 MobiDBLite consensus disorder prediction 1082 1104 - -
Adu05g01619 1418 MobiDBLite consensus disorder prediction 223 327 - -
Adu05g01619 1418 Pfam C-terminal domain of Sin3a protein 1143 1389 IPR031693 -
Adu05g01619 1418 SUPERFAMILY PAH2 domain 123 194 IPR036600 GO:0006355
Adu05g01619 1418 Coils Coil 566 590 - -
Adu05g01619 1418 MobiDBLite consensus disorder prediction 425 478 - -
Adu05g01619 1418 ProSiteProfiles PAH domain profile. 39 109 IPR003822 GO:0006355
Adu05g01619 1418 MobiDBLite consensus disorder prediction 782 854 - -
Adu05g01619 1418 Pfam Sin3 family co-repressor 500 590 IPR013194 -
Adu05g01619 1418 Pfam Paired amphipathic helix repeat 62 106 IPR003822 GO:0006355
Adu05g01619 1418 Pfam Paired amphipathic helix repeat 359 403 IPR003822 GO:0006355
Adu05g01619 1418 Pfam Paired amphipathic helix repeat 149 192 IPR003822 GO:0006355
Adu05g01619 1418 PANTHER SIN3B-RELATED 956 1399 IPR039774 GO:0003714
Adu05g01619 1418 PANTHER SIN3B-RELATED 1 828 IPR039774 GO:0003714
Adu05g01619 1418 MobiDBLite consensus disorder prediction 817 844 - -
Adu05g01619 1418 MobiDBLite consensus disorder prediction 967 988 - -
Adu05g01619 1418 Gene3D Paired amphipathic helix 124 196 IPR036600 GO:0006355
Adu05g01619 1418 MobiDBLite consensus disorder prediction 1045 1059 - -
Adu05g01619 1418 SMART hdac_interact2seq4b 497 597 IPR013194 -
Adu05g01619 1418 MobiDBLite consensus disorder prediction 921 1110 - -
Adu05g01619 1418 Gene3D Paired amphipathic helix 335 407 IPR036600 GO:0006355
Adu05g01619 1418 SUPERFAMILY PAH2 domain 337 403 IPR036600 GO:0006355
Adu05g01619 1418 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 828 - -
Adu05g01619 1418 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 956 1399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01619 Adu-Chr5 30102634 30114892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01619 28 144 WRKY Transcription Factor Family AT4G12020 50.427 5.91e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Adu05g01619 Sin3a_C 3.2e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01619 K11644 - gmx:100811928 2258.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g01619 05 30102634 30114892 Adu05g01619 05 30102634 30114892 ECH
Adu05g01619 05 30102634 30114892 Adu03g03823 03 126905405 126942279 PCT