Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01556 ATGGGTGATAGAGCTCTTCCTCCAACTTTTGTTTCAACTCATGGGGAACGATTAGGTCCAATGTTCTATGTTATTGACGAGGACAACCAACCCATCCAAGTTCACATTGATCCTAATGCATATGTGCCTGAGCTAATGGACCCAGAGACACTTGATAATGTATCAAGAGTGTTTCACATCAAGTATACCAGGATTGATGAGGAGTCATCAGCTGATGTGATGGTTCTATCTGGGTCTGAACCATCTGATGATCAGTTTTCATCAGATGGTGATGAAAACAATGATCAAGATGGGACACTGGTAGGGGATAATCCGCATAATCCGATAGATTTGTCTAGTGGAAATAGTTTATCATTGGAGGTCAACAAACAAAGTAACGCGGCAAACGAATTGGCTAATCCTAGATATGCTCCGGAGGTTTCTTCGGATGTCGGACAATCTAAATTGTATTTGGCTTCAAAATTTGCTGTGTATCTTAAGCTATCTGGAGATGGTTTGATTTGGACGATCACCGGTCCAAATTCCAATGTAGAGAAAAATGTGTTCTTTTTTCACTTACTGAAAAATGGAGGAAGAGGTCGAGAATGGAAATTTGGGGTCGGGTGGAGTGAGTGTTGTAGAATATACAACTTAAAGGAGGGTGATATCATTACTTTGAAACTCGGCTCGATAGCTAACCGCCAGGTCCGTCGGCGTCGCAGGAAGCTCCGTCGCCGTCGCAGGAAGCTCCGTCGCCGTCGTAGGAAGCTGAGTCGCCGTCGTAGGAAGCTCCCTCGCCATCGTGTGAAAGCTCTGTGGCCATCGTTGTCTCCTCTGTTCGAGCGCTCTCTCTCTCTCTCTGGGTGTTCGAGCTCTCTCTGTGTGTTCGCCGGTGTCGCCGTATCCTCTGTCGTCGCCTCACTCCCCTTCCTTCTCGCCGCCGTCCAAGACCTCCCCAGAAGAGACGAGAAAACAGTGACAAAAGAAGATACTCGGCTCGCAGGCCCTTCTCCCTCTCCCACTGTTGTTAATGTCTATGTTCCCAAGGACAGAGTCACTAACCAACACCAGGGATATGGATTTGTTGAATTCCGTAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAATATGATTAAACTTTACGGCAAGCCAATTCGTGTAAATAAGGCAACCCAAGATAAAAAGAGCTTGGATGTGGGGGCAAACCTTTTCATTGGCAACCTTGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATTATGAGAGATCCTGATACCGGAAATTCCCGTGGTTTTGGTTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGGCAATATCTTTGCAATCGCCAAATTACAGTGTCATATGCTTACAAAAAAGACACTAAAGGGGAACGGCACGGCACGCCAGCAGAAAGAGTTTTGGCTGCAAGCAATCCTACTGCGCAGAAGAGTAGGCCTCATACGAGATTCGCCAGTGCACCTCCAACACTCGCCAATGTTGCTCAGGCTAATGGTACTGTTGCTGTTCCGGTACCTCCTCACCCCTTTGCTAATGGAGTTGCTCCACCTCCCATTCCTGCCCTCCGACCACCACCACCACCCCCTCAAGCAGCAGCATTTCAGCCTATGCCAGGAGCTGGGCAACCAACATGGCATCAACAACAGCCCGGACTCCCGCCTGGAATGCCCTGTTTGGCGACCACAACCACCGCCACCGCAGCAACAGGGTGGACGACCTATGGCATATCCTCAACCCTCAATGCCTCCACCTTCCTATAG 1830 0.4765 MGDRALPPTFVSTHGERLGPMFYVIDEDNQPIQVHIDPNAYVPELMDPETLDNVSRVFHIKYTRIDEESSADVMVLSGSEPSDDQFSSDGDENNDQDGTLVGDNPHNPIDLSSGNSLSLEVNKQSNAANELANPRYAPEVSSDVGQSKLYLASKFAVYLKLSGDGLIWTITGPNSNVEKNVFFFHLLKNGGRGREWKFGVGWSECCRIYNLKEGDIITLKLGSIANRQVRRRRRKLRRRRRKLRRRRRKLSRRRRKLPRHRVKALWPSLSPLFERSLSLSGCSSSLCVFAGVAVSSVVASLPFLLAAVQDLPRRDEKTVTKEDTRLAGPSPSPTVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKATQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTRFASAPPTLANVAQANGTVAVPVPPHPFANGVAPPPIPALRPPPPPPQAAAFQPMPGAGQPTWHQQQPGLPPGMPCLATTTTATAATGWTTYGISSTLNASTFL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01556 609 MobiDBLite consensus disorder prediction 477 507 - -
Adu05g01556 609 PANTHER SPLICING FACTOR 3B SUBUNIT 4 334 578 - -
Adu05g01556 609 MobiDBLite consensus disorder prediction 77 116 - -
Adu05g01556 609 Gene3D - 308 395 IPR012677 -
Adu05g01556 609 MobiDBLite consensus disorder prediction 492 507 - -
Adu05g01556 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 387 IPR000504 GO:0003723
Adu05g01556 609 SUPERFAMILY DNA-binding pseudobarrel domain 142 234 IPR015300 -
Adu05g01556 609 MobiDBLite consensus disorder prediction 235 259 - -
Adu05g01556 609 MobiDBLite consensus disorder prediction 547 574 - -
Adu05g01556 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 398 468 IPR000504 GO:0003723
Adu05g01556 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 334 381 IPR000504 GO:0003723
Adu05g01556 609 Coils Coil 226 253 - -
Adu05g01556 609 MobiDBLite consensus disorder prediction 92 116 - -
Adu05g01556 609 CDD RRM1_SF3B4 327 384 IPR034158 -
Adu05g01556 609 Gene3D - 396 484 IPR012677 -
Adu05g01556 609 CDD RRM2_SF3B4 395 477 IPR034159 -
Adu05g01556 609 PANTHER TRANSFORMER-2-RELATED 334 578 - -
Adu05g01556 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 396 475 IPR000504 GO:0003723
Adu05g01556 609 SMART rrm1_1 397 471 IPR000504 GO:0003723
Adu05g01556 609 SMART rrm1_1 305 383 IPR000504 GO:0003723
Adu05g01556 609 SUPERFAMILY RNA-binding domain, RBD 333 479 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01556 Adu-Chr5 27073237 27080637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01556 348 560 Eukaryotic Initiation Factors Gene Family AT4G34110 27.897 4.56e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01556 K12831 - gmx:100791039 417.927