Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01540 ATGCGAGATACTGAGAAAAAGTTAAATAAGAGAGGATTTAGAAAATCCAGTCACTCAAGGGAACATACTGATTCAAAGCTTGATTTGTCACCGAGATTCGAAACAAGTAGTAACAAAGGCCAAGGGAAGAAGCAGAAATTGAAATCGAAACCTCACAAACTCGTTGTTTGCACAGCCACATCAAGGGGCACAGCAACTGATTCTTCTTCCATCAAGGGGTCAATCAAAGGTGCTTCAAGTGAAAAATTGATTGTTGGACAAAATATGCATTACAATGATGGGAAATCTTTGCAGATGCTCTCTTCGACAAAGCAACCGGGGGAGAAAATTTCTTTTTGTCCTATTGTCGACAGGAACGATGCTGATGGGGAAGTGAATATTCAAAAAGTTAAGAGAAGGAGAAGGAGGAAAAGGCGAAGGGATAATGTGGATCTTGATGATGCTTTGCGCCTGCAGAGGAGAACAAGGTATCTGTTAATCAAAATGAAGGTAGAGCAGAACCTTATAGATGCATACTCTGGAGAAGGCTGGAAAGGTCAAAGTCGAGAAAAGATTAGACCGGAGAAGGAACTACAAAGAGCAAAGAAGCAGATTTTAAAATGTAAACTTGGTATTCGCGATGTCATTTGCCAGTTGGATGCTCTTAGTTCTGTGGGCAGGATTGAAGATTCCGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCAAAATGCAAGTTGCCTGAAGCATTCCCCGATAATGACATTATACTCTGCGACGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTCGACCCACCGTTGGACACTGAAAATATTCCTCCTGGAGACCAATGCTGGTTTTGCAAGTTTTGTGAATGTAAGATGGAAATACTCGAGGCAACGAATGCTCATCTTGGGACCGACTTCTCCTTGGACAGTACATGGCAGGATGTATTCAAGGAAGAAGCTACTGTACCAGATGATTGTGCCGCTTTATTAAATCCGGAAGAAGAATGGCCGTCAGATGATCCAGAAGATGATGATTATAACCCGGACAGGAGAGAAAACACTCACAACATCAATGCAGAAGGCACTGATGAAAGTCCATCTGATTCAAGCAGCTCTATCAGTCTTTCGTCCTTAAACGATGAATATTCTCCTGTAGACAAAGCCATGAGCCTTGAATATCTTTCTGTTAATAGTTGCGTTGATTCTGATGGATATGGGGAAATAGTATGCAGCCGCAGGCAGCGTAAAGCAGTTGACTACAGGAAACTTTATGATGAAATGTTTAAGGATGCTCCTCCATGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGGAGAGAAAAGGAATCTGATGCTGCTAATACACTTATGACGCTGCACGAAAGCGATAATAAATTTCCGAATAATGAGAACAACGATACAGTAAGAGAGGGCACACACACACATATAAAAAGATCTTGCTTCAGAATTCCACATCATGCAGTTGAGAAGCTTCGCCAAGTTTTCGCAGACAATGAACTTCCTCCGAGATCCGTGAAGGAACACATTTCAAAAGAGTTGGGAATCGATGCTGCAAAGGTTAGCAAGTGGTTTAAAAATGCTCGTTACTTAGCTCTTAAAACCAGGAAGCATCAAGTCGAAGGAGGAGAGCTGCCTTTGAGTTTGTTGTGTAAGACCTCGAAGGGTTCCAGTTTACAAAATGTGGACAAAGATGAGATTTTGCAGAAATCAAAGGCCTCTAAAATTGCGATGGTTCATTCACCGAATAATGGTAACGGTATTACCGATAGACAGAAAGTGAAGTCATCTGGCAGTATTTGGAAAAAAAGGCAACCGGAAATATCTCCTGCTAAGACAGCAGAAAATGGCAACAAGGACTTGGAAGAAGGGAGTGATGATGTTGGCTTGAAGAAGCTGCTACAAGAAAAGAAAAGAAAGATGGAATTTGTGTTTGGAGGAGACTCTAAGGCAGCAGAGTTGGAATTTGAAAGACTTAGCAAATTGAAGGCTAAACTAGATAGCATGAAGGTTAAATTAATTGAAGTTCAAAACCACAGAGCAAAGGGTGCAAAGGAACCATGTGTTATATATGTGCCCACAGCTCAGTTAAGGGAAAAAGAAAATGAAAGAAGTGACGCAAACCTGTTGAAGTTGGATTTGCTTATACATATTGATAATTTAACATTAGCAATTGCTCATTatctgcaaacagattcgaaagcggGAAGAAACAGTTTCTCTAAAAACAATCTCACCCTAAACGCACTCACGTCACTCTCTGAAATCATTTTCTTCCTCTCCCAGCTGTCTGCCAGCTGTGCTCTCCTCCTACCCAGCTCCCGCATTCCCTTCTCCGCCGTCGTCTCCTTCACTTCGCCGGCACAAGCTCGCCCGTTTTCGCTTTCCTCGCTCTTGCCTTCGTTGCCGTCGCAATCATCACCTTCCAGCCACTTTGTAGACGTTGTCGTCGCTGTCTCCCTCCCGTCAACTCCTCCCTCTCAGAAGCCTTGCAATCGCCGACGTCGCCTCTCAAACTGCAATTCGAAAGGTTATTATTCTCTTTTGGGCAAGTTTTGTGGATTGGTGATTCCTAGTTCGCTGATTGCCATTGATCATTGGTCGCCGGAGGTGAAGAGAGCCATCTCCCCCTTTTCTCTTCTCTCTCTATTACCTGCTATTGTTCTCTCTGGTGGCGTTGTCGTTATTCGTGGCCGCGCATCTCATCTTTCCGGTCCCAAGGGAAGACCGCCGTTGAGTGGTGGTGGCATAGCCACGATCAGAAGTTCGCGACGGAACCCACAAGATCCGAGATCTTCACCTTTCCCCATTGCTGCTCCATCAAGGTAA 2868 0.4324 MRDTEKKLNKRGFRKSSHSREHTDSKLDLSPRFETSSNKGQGKKQKLKSKPHKLVVCTATSRGTATDSSSIKGSIKGASSEKLIVGQNMHYNDGKSLQMLSSTKQPGEKISFCPIVDRNDADGEVNIQKVKRRRRRKRRRDNVDLDDALRLQRRTRYLLIKMKVEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILKCKLGIRDVICQLDALSSVGRIEDSVIAPDGSVYHEHIFCAKCKLPEAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQCWFCKFCECKMEILEATNAHLGTDFSLDSTWQDVFKEEATVPDDCAALLNPEEEWPSDDPEDDDYNPDRRENTHNINAEGTDESPSDSSSSISLSSLNDEYSPVDKAMSLEYLSVNSCVDSDGYGEIVCSRRQRKAVDYRKLYDEMFKDAPPCEQVSEDEDWGPGKRKRREKESDAANTLMTLHESDNKFPNNENNDTVREGTHTHIKRSCFRIPHHAVEKLRQVFADNELPPRSVKEHISKELGIDAAKVSKWFKNARYLALKTRKHQVEGGELPLSLLCKTSKGSSLQNVDKDEILQKSKASKIAMVHSPNNGNGITDRQKVKSSGSIWKKRQPEISPAKTAENGNKDLEEGSDDVGLKKLLQEKKRKMEFVFGGDSKAAELEFERLSKLKAKLDSMKVKLIEVQNHRAKGAKEPCVIYVPTAQLREKENERSDANLLKLDLLIHIDNLTLAIAHYLQTDSKAGRNSFSKNNLTLNALTSLSEIIFFLSQLSASCALLLPSSRIPFSAVVSFTSPAQARPFSLSSLLPSLPSQSSPSSHFVDVVVAVSLPSTPPSQKPCNRRRRLSNCNSKGYYSLLGKFCGLVIPSSLIAIDHWSPEVKRAISPFSLLSLLPAIVLSGGVVVIRGRASHLSGPKGRPPLSGGGIATIRSSRRNPQDPRSSPFPIAAPSR 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01540 955 ProSiteProfiles Zinc finger PHD-type profile. 236 293 IPR019787 -
Adu05g01540 955 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 695 - -
Adu05g01540 955 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 287 IPR013083 -
Adu05g01540 955 MobiDBLite consensus disorder prediction 592 638 - -
Adu05g01540 955 MobiDBLite consensus disorder prediction 1 52 - -
Adu05g01540 955 Gene3D - 490 554 - -
Adu05g01540 955 SUPERFAMILY FYVE/PHD zinc finger 230 296 IPR011011 -
Adu05g01540 955 MobiDBLite consensus disorder prediction 437 458 - -
Adu05g01540 955 SMART HOX_1 490 552 IPR001356 GO:0003677
Adu05g01540 955 MobiDBLite consensus disorder prediction 592 608 - -
Adu05g01540 955 SMART PHD_3 238 291 IPR001965 -
Adu05g01540 955 ProSitePatterns Zinc finger PHD-type signature. 239 290 IPR019786 -
Adu05g01540 955 SUPERFAMILY Homeodomain-like 491 552 IPR009057 -
Adu05g01540 955 CDD PHD_PRHA_like 238 290 IPR045876 -
Adu05g01540 955 Coils Coil 672 692 - -
Adu05g01540 955 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Adu05g01540 955 PANTHER POLYCOMB PROTEIN PCL 1 695 - -
Adu05g01540 955 Pfam PHD-finger 238 293 IPR019787 -
Adu05g01540 955 MobiDBLite consensus disorder prediction 914 955 - -
Adu05g01540 955 Pfam Homeodomain 498 543 IPR001356 GO:0003677
Adu05g01540 955 MobiDBLite consensus disorder prediction 361 380 - -
Adu05g01540 955 CDD homeodomain 491 552 IPR001356 GO:0003677
Adu05g01540 955 MobiDBLite consensus disorder prediction 332 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01540 Adu-Chr5 26381970 26389779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01540 138 552 Homeobox Transcription Factor Family AT4G29940 56.047 1.09e-144 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Adu05g01540 Homeodomain 6.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01540 - - gmx:100787118 883.248