Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01421 ATGGAGGAAATGTACGGAGTGCCGTCGACGGCGGAGTACGCCGACAAGGCCCTCATGACGCCGGAGAATCTGATCTTCCCTGCCGACTACCACAGCTTCCTCATGTCCGCTTCCTCGTCCTCCTCCGCCTCCGCCGCCGCAGCTACGATTCCTATGCTCGGATCCGACGAGCTTCTCTCTGCCGCTGGAATTCAACAGCAGCAACCACAGCACAACAACGAGGCCATGGCATCGACCATGATGAAAGCTAAAATCGCTTCTCATCCTCACTACCCTCGCCTCCTGCAAGCCTACATCGATTGCCAGAAGGTCGGCGCACCTCCAGAAATCGCGTGTTTGTTGGAGGAAATTCGCCGCGAAAACGACCTTTTCAAGAGAGACGACGTCGAAACGTACTGTGAGTTGCTGGTGAAGTATAAATCGGACCTGGCTAGGCCGTTCGATGAGGCAACGAGCTTCCTTAACAAGATCGAAATGCAGTTAAGCAATCTCTGCTGCAACGGTGCTTCTGTTCCAACTCTTTCTGATGATGGAGCTGTGTCTTCAGAGGAAGATTTTAGTGCTGGAGATGGTGATGGAGGTCAAGATGGTCAATCAAGGGGTGAAGATCGTGAGCTTAAGGACAGGCTTCTGCGCAAGTTTGGGAGCCACATTGGTACTTTGAAATTGGAGTTCTCAAAGAAGAAAAAGAAGGGTAAGCTGCCTAAGGAAGCAAGGCAAACACTCCTTCAATGGTGGAATGTTCACTACAAATGGCCTTATCCTACGGAAGCTGACAAGATTGAACTGGCTAAGTCAACAGGGCTAGATCAGAAACAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAGCCATCTGAGAATATGCAATTTTCTATGATGGAAAATCTTGGTGGCCGATTCCTTCCTGATGAATGA 927 0.493 MEEMYGVPSTAEYADKALMTPENLIFPADYHSFLMSASSSSSASAAAATIPMLGSDELLSAAGIQQQQPQHNNEAMASTMMKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDLFKRDDVETYCELLVKYKSDLARPFDEATSFLNKIEMQLSNLCCNGASVPTLSDDGAVSSEEDFSAGDGDGGQDGQSRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLGGRFLPDE 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01421 308 Gene3D - 224 297 - -
Adu05g01421 308 Pfam ELK domain 205 226 IPR005539 GO:0003677
Adu05g01421 308 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 298 - -
Adu05g01421 308 CDD homeodomain 237 289 IPR001356 GO:0003677
Adu05g01421 308 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 298 - -
Adu05g01421 308 ProSiteProfiles 'Homeobox' domain profile. 225 288 IPR001356 GO:0003677
Adu05g01421 308 SMART KNOX1_2 79 123 IPR005540 GO:0003677|GO:0005634
Adu05g01421 308 Pfam Homeobox KN domain 245 284 IPR008422 GO:0003677|GO:0006355
Adu05g01421 308 SMART ELK_2 205 226 IPR005539 GO:0003677
Adu05g01421 308 SUPERFAMILY Homeodomain-like 226 297 IPR009057 -
Adu05g01421 308 MobiDBLite consensus disorder prediction 177 205 - -
Adu05g01421 308 ProSiteProfiles ELK domain profile. 205 225 IPR005539 GO:0003677
Adu05g01421 308 SMART KNOX2_2 121 166 IPR005541 GO:0003677|GO:0005634
Adu05g01421 308 SMART HOX_1 227 292 IPR001356 GO:0003677
Adu05g01421 308 ProSitePatterns 'Homeobox' domain signature. 263 286 IPR017970 GO:0000981|GO:0006355
Adu05g01421 308 Pfam KNOX1 domain 81 122 IPR005540 GO:0003677|GO:0005634
Adu05g01421 308 Pfam KNOX2 domain 130 165 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01421 Adu-Chr5 22171058 22180169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01421 1 308 Homeobox Transcription Factor Family AT1G23380 59.104 3.84e-133 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Adu05g01421 KNOX1 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01421 - - gmx:100794719 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g01421 05 22171058 22180169 Adu05g01421 05 22171058 22180169 ECH
Adu05g01421 05 22171058 22180169 Adu03g03735 03 125901236 125908001 PCT