Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01365 ATGAAGAATAGGACTGTCTTTGATGAAAAGTTACATCAAGGTTCTGATAATATGAGAGGGAATTCTCTTATTCAACTATCTGCTCCTCCTCAATATGTTTTGGTAAAGAGTTCTCAGATTGGAGAAGGTTCTTGCGATAAAAAAGTTACCGTCGGGCCAGAACTGGCCTTTCGAGATTTATCCGATTATAACTTACAAAGGAAATCTCAACCAGCCTCCCAAAATGTTCAAAATGGATCCGTAGAATCAACTAACTCAATAAGTAGCCTTTTTGTTCAGGATCAAATGCAGCCGAGTCCTTCACAAGAGAACATGAGCTCAGTGATTGAACACTTGGACCTGCCTACTGGGGATGTTGCAGGAAATGATGGTCCTAACTGTTTACAAAGAAAGTCTAAAAGGCTGACTCAAATGAGGTTAAAGTCGGAGGACAGCAGAACTCCAAAATTACTGAAGGGAAAATATACACTCAGGTCTTCGAGAAGCAGTGACAGAGCTTTGCAGTCGCAGACTCGAGAAAAATGTAAAGTACCTGAACTAAGTAGCGACTTGATTGATGTTAAAAATGTTGGAGAGAAGAAGAGAAGAGGGAGGAAGAGAAAACAATGGGGAGGAGAGGGAATTATTGATGAATTTTCAAGAATAAGGAGTCACTTACGATATTTATTGAACCGAGTAAGCTATGAGCAAAGCTTGATTGATGCTTATTCTGGCGAGGGCTGGAAAGGATACAGCATTGAAAAATTAAAGCCTGAGAAGGAGCTTCAACGAGCTAAGTCTGAAATTCTTAGGAGAAAATTGAAAATCAGGGATCTATTTTGGAATTTGGGTTTATTGTGTGCTGAAGGAAAGCTTCCAGAGTCTTTGTTTGATTCGGAAGGAGCAATACGCAGTGACGATATTTTCTGTGCAAAATGCGGGTCCAAAGAGCTGACCACTGATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGATTTCACCAATGCTGTTTAAATCCTCCATTGTTAACTAAAGACATTCCGCCGGGCCATGATATTTGGCTATGCCCAGGATGTAACTGCAAACTTGAATGCATTAAACTTCTTAATGACGTCTTAGGAACAAGTCTTTCTATTAGGGACACCTGGGAGCGGGTTTTTCCTGAAGCAACAGAGGCTGCTGGAACCAATGCGGGCCATAGCCTGGGACTTCCTTCAGTTGATTCTGATGACAACGATTACAAGCCTAAAGCTCCGGAAGATGAAGAGGTTGAAGGTGGAGAATCAAGCTCTGATGGATCTGATTATGCTTCTGATTCTGAGAAATTGAAAGATTTGCATTCAGAGGATGATGATTATGATCCAAATGCTCCAGATACTGATAGGGGAGCCTCTGAAGAAAATTCAAGCTCTGGTTTCATATCTGATGACACTGTGGACGAAGCTCAAATGCTTGCACCACAGGATGATATTATGAAGTGTAAAAGCTCTCGCAGTAAAAAGTTCAAAGTTGGTTAG 1503 0.4105 MKNRTVFDEKLHQGSDNMRGNSLIQLSAPPQYVLVKSSQIGEGSCDKKVTVGPELAFRDLSDYNLQRKSQPASQNVQNGSVESTNSISSLFVQDQMQPSPSQENMSSVIEHLDLPTGDVAGNDGPNCLQRKSKRLTQMRLKSEDSRTPKLLKGKYTLRSSRSSDRALQSQTREKCKVPELSSDLIDVKNVGEKKRRGRKRKQWGGEGIIDEFSRIRSHLRYLLNRVSYEQSLIDAYSGEGWKGYSIEKLKPEKELQRAKSEILRRKLKIRDLFWNLGLLCAEGKLPESLFDSEGAIRSDDIFCAKCGSKELTTDNDIILCDGACDRGFHQCCLNPPLLTKDIPPGHDIWLCPGCNCKLECIKLLNDVLGTSLSIRDTWERVFPEATEAAGTNAGHSLGLPSVDSDDNDYKPKAPEDEEVEGGESSSDGSDYASDSEKLKDLHSEDDDYDPNAPDTDRGASEENSSSGFISDDTVDEAQMLAPQDDIMKCKSSRSKKFKVG 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01365 500 MobiDBLite consensus disorder prediction 430 456 - -
Adu05g01365 500 MobiDBLite consensus disorder prediction 1 15 - -
Adu05g01365 500 MobiDBLite consensus disorder prediction 136 150 - -
Adu05g01365 500 CDD PHD_PRHA_like 302 354 IPR045876 -
Adu05g01365 500 ProSitePatterns Zinc finger PHD-type signature. 303 354 IPR019786 -
Adu05g01365 500 PANTHER HOMEOBOX PROTEIN HAT3.1 91 472 - -
Adu05g01365 500 SUPERFAMILY FYVE/PHD zinc finger 295 362 IPR011011 -
Adu05g01365 500 MobiDBLite consensus disorder prediction 405 419 - -
Adu05g01365 500 SMART PHD_3 302 355 IPR001965 -
Adu05g01365 500 MobiDBLite consensus disorder prediction 389 500 - -
Adu05g01365 500 MobiDBLite consensus disorder prediction 1 22 - -
Adu05g01365 500 MobiDBLite consensus disorder prediction 114 150 - -
Adu05g01365 500 MobiDBLite consensus disorder prediction 457 472 - -
Adu05g01365 500 Pfam PHD-finger 302 357 IPR019787 -
Adu05g01365 500 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 91 472 - -
Adu05g01365 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 359 IPR013083 -
Adu05g01365 500 ProSiteProfiles Zinc finger PHD-type profile. 300 357 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01365 Adu-Chr5 20691513 20700653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01365 210 438 Homeobox Transcription Factor Family AT3G19510 59.091 1.48e-88 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Adu05g01365 PHD 3.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01365 - - adu:107488674 975.696