Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01354 ATGACGAACAGATTTTTATGTGAGATCTGTAGGAAAGGATTTCAGAGGAACCATAATCTGCAGCTACATAAAAGAGGCCACATCTTGTCGTGGAAGCTGAAGCAGAGAACGAAGATGGAGGTGGTGAGGAAGAAGGTATACGTGTGCTCGGAGCCAACTTGCGTGCACCACGATCCTGCCAGAGCACTAGGAGACCTCACCAAAATCAAGAAGCACTTTAACCAGAATCACGGCGAGAAGAAGTGGAAATGCGACAAGTTCTCTAAGAAGTACACAGTTCAATCCGACTGGAAAGCTCACTCCAAAAACTgcggcaccctcttcgcggatctactggcgtcgacgtcgagctag 354 0.404 MTNRFLCEICRKGFQRNHNLQLHKRGHILSWKLKQRTKMEVVRKKVYVCSEPTCVHHDPARALGDLTKIKKHFNQNHGEKKWKCDKFSKKYTVQSDWKAHSKNCGTLFADLLASTSS 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01354 117 Gene3D Classic Zinc Finger 2 27 - -
Adu05g01354 117 SUPERFAMILY beta-beta-alpha zinc fingers 4 101 IPR036236 -
Adu05g01354 117 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Adu05g01354 117 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 106 - -
Adu05g01354 117 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 27 IPR013087 -
Adu05g01354 117 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 2 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01354 Adu-Chr5 20493811 20494164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01354 2 106 IDZ Gene Family AT1G55110 77.143 1.17e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu05g01354 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01354 K25870 - adu:107488607 254.218