Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01333 ATGGGTGAGGGGCACTTCTCCTCTTGTAAACAGGCACCAAGGATGGCTTCAAATTCAAGCTCGAAGAAAAACAAAGGTCGCCACAAGATCGAGATGAAGAAGATGATGAAGGAGAGCAACTTGCAAGTGACATTCTCAAAGCGTCGCGGTGGGCTTTTCAAGAAAGCGAGCGAGCTAAGCACCCTTTGCGGTGTTGAGTTGGCACTCATCGTGTTCTCGCCGGGGAACAAGGCCTATTCTTTTGGGCACCCCAGCGTGGAAGCCCTCATCAAAAGCTTCACGGAAGGTGGGGGCCCGCCACACCTGGACGCTGCCACCGTCCACTTCACGACGGAGGCTCATGATGAGCTCAACACATTGCTGGCGAAGATCAACGAGGAGATCGAAGCGGAGAGGAAGCAGTTGCAGGAGATGAACCGCTGGCGGAAGGAGGCAGAGGCTAAGTGGTGGTGGGCTGCTCCTGTTGGTGAGATGAGTGTGCCCAAACTGAAGCAATATAAGGTGGCGCTGGAGAAGCTGAAGAAGACCGTTACTTGCCACTTCGAGAAGCTTCGTATTAATAAAGACCCTGTGACTGTGGGGAATTATACTCCTAATAACATGATGCGGCTGCCTGTGCATGTGCCGATGCAAGTGTCGTTGCCGATATTTTTCTCGTCACTGTTTCAAAACTCTCAAATGCATAATCATCATCAAGCATTTCAAGATGAGATCCCGTACCACCAATTTTATAGCTACACTGCCATGTTGCAACAGGGAGGAGGATCCTCCTTTGAACCATACACTCGTCATAACTAA 798 0.505 MGEGHFSSCKQAPRMASNSSSKKNKGRHKIEMKKMMKESNLQVTFSKRRGGLFKKASELSTLCGVELALIVFSPGNKAYSFGHPSVEALIKSFTEGGGPPHLDAATVHFTTEAHDELNTLLAKINEEIEAERKQLQEMNRWRKEAEAKWWWAAPVGEMSVPKLKQYKVALEKLKKTVTCHFEKLRINKDPVTVGNYTPNNMMRLPVHVPMQVSLPIFFSSLFQNSQMHNHHQAFQDEIPYHQFYSYTAMLQQGGGSSFEPYTRHN 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01333 265 Coils Coil 114 148 - -
Adu05g01333 265 SMART madsneu2 25 84 IPR002100 GO:0003677|GO:0046983
Adu05g01333 265 CDD MADS_MEF2_like 26 93 IPR033896 GO:0000977|GO:0045944
Adu05g01333 265 PANTHER MADS BOX PROTEIN 24 192 - -
Adu05g01333 265 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 24 192 - -
Adu05g01333 265 Gene3D - 38 98 IPR036879 GO:0003677|GO:0046983
Adu05g01333 265 Gene3D - 101 190 - -
Adu05g01333 265 SUPERFAMILY SRF-like 26 104 IPR036879 GO:0003677|GO:0046983
Adu05g01333 265 ProSiteProfiles MADS-box domain profile. 25 85 IPR002100 GO:0003677|GO:0046983
Adu05g01333 265 MobiDBLite consensus disorder prediction 1 28 - -
Adu05g01333 265 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 81 IPR002100 GO:0003677|GO:0046983
Adu05g01333 265 PRINTS MADS domain signature 27 47 IPR002100 GO:0003677|GO:0046983
Adu05g01333 265 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677|GO:0046983
Adu05g01333 265 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01333 Adu-Chr5 19972308 19973729 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01333 22 179 Type I MADS-box Gene Family AT5G60440 48.466 7.32e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu05g01333 SRF-TF 3.2e-23 No_clan