Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01320 ATGGCTAACCAGCAACAACAACCTCTTCTAAGCAATAATAATAAGACTCCGAAATTCCTATCCCTTCTCCTCACTACTGTAGTTGTTGTAGTTGTAGTTGGAATTGGTGTCCTTGCCTCATCATCCCTTATTGCTAATTCATATCTCAGCACCAAACCCAGTTCCGATCTCTGTCAACACGCCGTTAACAGAGCAACCTGCTTGGCCCATGTCTCCGAAATAGCTCAAGGTCACATCCTGGCAACCACAAAAGACAACTACAATCTTCTCCAATCCTTCCTTGTCAAGTCCACCTCAGGCATCCAAGAAGCCATGACCACAGTCAACGCCGTCAAGATCCGCCTCAACGCCACTCCACGCCAGGAAGCAGCCTTGCAAGTCTGTGCAGACCTCATGGACTTGTCCATTGGTAGAGTTCTTCAATCAGTGGTGGCTCTCACTAAAAGGAACACTACTCATTCTCTGCAAGATGCACACACATGGCAGAGCAGTGTTCTCACCAACCATGCCACTTGCTTGGATGGCTTAGAAGGCTTCTCTGCTCGTGCCATTATGGAGCCTCAACTCTCGGACCTCATGTCCAGGGCAAGAACCTCTCTCGCCATGTTTGTTGCAGTCTTGCCAACGAAGGCCCATCAGCACCAACTCCTTGAGGAGCCACTCAACCGAGAGTTTCCCTCATGGGTCACACGCACCGATCGGAGGCTTTTGGAGTCTGTGGCTGCTGATATAAAGGCTAATGTTGTGGTGGCCAAGGATGGAAGCGGCAAGTTCAAGACGGTGGCGGAGGCTGTGGCTTCTGCACCTGATAACGGTAAAACAAGGTACGTAATATATGTGAAGAAGGGAACGTACAAAGAGAATGTTGAGATCAGTTCAAAGAAGAAGAACGTCATGCTTGTTGGTGACGGTATGGATGCAACCATTATCACCGGCAGCTTGAACTTTGTCGATGGAACTGGCACCTTCCAATCCGCCACCGTCGCCGCCGTTGGTGATGGGTTTATAGGGCAAGACATTTGGTTTCAAAACACGGCAGGGCCAGAGAAGCACCAGGCGGTGGCACTCCGTGTGGGAGCGGACACCTCCGTGATCAACCGGTGCCGCATCGATGCCTACCAGGACACTCTGTACACCCACAGCAACAGGCAGTTCTACCGTGATTGCGTCATCACCGGCACTATCGACTTCATCTTTGGAAATGCTGCTGTTGTGTTCCAGAATTGCAACCTGGTGGCTCGAAAGCCCATGAGCAACCAAAAGAACATGGTGACGGCCCAAGGACGCGAAGACCCCAACCAAAACACAGGGACCTCCATTCAGCAGTGCAAAATAACAGCGAGTTCGGATCTGAAGCCCGTGGTGGGGTCCATCAAGACTTATCTGGGGCGGCCATGGAAGAAGTATTCAAGAACGGTTGTGATGCAATCTTCAATAGATGGGCATATTGACCCCGCAGGATGGTCTGAATGGGATGATAAGACTAAGGACTATTTGGAAACTCTGTATTATGGAGAGTACATGAACAGTGGTGCTGGTGCTGGCACCAGCAAGAGGGTTACGTGGCCTGGTTACCACATCATCACCAGTGCCGCAGAGGCTAGCAAGTTCACAGTGGCTCAGCTCATCCAAGGCGATGTTTGGTTGCAGAACACCGGTGTTAACTTCATTACCGGCCTCTAG 1683 0.5074 MANQQQQPLLSNNNKTPKFLSLLLTTVVVVVVVGIGVLASSSLIANSYLSTKPSSDLCQHAVNRATCLAHVSEIAQGHILATTKDNYNLLQSFLVKSTSGIQEAMTTVNAVKIRLNATPRQEAALQVCADLMDLSIGRVLQSVVALTKRNTTHSLQDAHTWQSSVLTNHATCLDGLEGFSARAIMEPQLSDLMSRARTSLAMFVAVLPTKAHQHQLLEEPLNREFPSWVTRTDRRLLESVAADIKANVVVAKDGSGKFKTVAEAVASAPDNGKTRYVIYVKKGTYKENVEISSKKKNVMLVGDGMDATIITGSLNFVDGTGTFQSATVAAVGDGFIGQDIWFQNTAGPEKHQAVALRVGADTSVINRCRIDAYQDTLYTHSNRQFYRDCVITGTIDFIFGNAAVVFQNCNLVARKPMSNQKNMVTAQGREDPNQNTGTSIQQCKITASSDLKPVVGSIKTYLGRPWKKYSRTVVMQSSIDGHIDPAGWSEWDDKTKDYLETLYYGEYMNSGAGAGTSKRVTWPGYHIITSAAEASKFTVAQLIQGDVWLQNTGVNFITGL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01320 560 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Adu05g01320 560 CDD PMEI-like_4 58 206 - -
Adu05g01320 560 Pfam Pectinesterase 247 546 IPR000070 GO:0030599|GO:0042545
Adu05g01320 560 PANTHER PECTINESTERASE 28 558 - -
Adu05g01320 560 Pfam Plant invertase/pectin methylesterase inhibitor 56 191 IPR006501 GO:0004857
Adu05g01320 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 202 IPR035513 -
Adu05g01320 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 206 IPR035513 -
Adu05g01320 560 SMART PMEI_2 49 202 IPR006501 GO:0004857
Adu05g01320 560 ProSitePatterns Pectinesterase signature 1. 272 291 IPR018040 -
Adu05g01320 560 SUPERFAMILY Pectin lyase-like 244 559 IPR011050 -
Adu05g01320 560 TIGRFAM PME_inhib: pectinesterase inhibitor domain 47 181 IPR006501 GO:0004857
Adu05g01320 560 Gene3D - 240 560 IPR012334 -
Adu05g01320 560 PANTHER PECTINESTERASE 28 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01320 Adu-Chr5 19554400 19557067 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01320 7 556 Carbohydrate Esterase AT1G11580 57.143 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01320 K01051 - gmx:100815836 786.178