Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01308 ATGACGAGAGctgcgccctcaccatcgtcgtctctgcgctcacatcgtcgagaagGTGCTGTGTTAAGGAAGAAACAAATTTTTTTCTGCAACCCAGCATGTTTAAGGAGAGTCACAAGCTTCTACTGCTGTCTCTGGACGAGAAATCCACAGGCTGCTGTTAGGGAGATATGGGAATACTTCTTGGGGAAATCGGGGAAGAAGGACTACTCAACGGCGATTCTTGAGCGGAAGAAGTCGCCGAACCGTCTTGTGGTGGATGAAGCTGTCAACGACGACAACTCTGTCATGTCCATGCACCCTGATACCATGGAGAAGCTCCAGCTCTTCTGTGGCGACACTATCCTCATCAAGGGCAAGAAAAGGAGGGATACTGTTTGCATAGCTCTTGCTGCTGACACCTGTGAAGAGCCCAAGATCAGGATGAACAGAGTTGTGAGGTCGAATTTACGGGTTCGTCTTGGAGATGTTGTGTCCGTGCACCAGTGCCTTGATGTGAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCTTACTTCTTGGAAGCTTACTCCTTTTTAATGAAACAAATGGCACAAATTCGTGAGTTGGTAAAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCGATTGGTGTGAAACCACCCAAAGCAATAGCTGTTGCTAATGAAACGGGAGCTTTCTTCTTTTGTATAAATGGACCGGAGATTATGTCCAAACTGGTAGGAGAGAGTGAAAGCAATCTGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGATGATTGTTTCACAGCTTTTGACTCTTATGGATGGATTGAAATCTCGTGCTCATGTTATCGTTATTGGAGCTACCAATCGCCCAAACAGCATTGACCTAGCATTGAGAAGGTTCGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGCCGACTTGAAGTTCTTCGTATACACACTAAAAGCATGAAGCTCTCTGATGATATTCAAACATTCAGATTTAAGAATGCAGATTTTTTTACACATTCGCAGTGTGAGAGAGAGACAGGAGAAATTTACCAGTTACCACAAGCAAATAGACAGGAGAGAAAGACGGCGACACAGGAAGCTACAACGGTTAGAGGAAAGGGGCTTGATAGCGACGACGACTCGACGACTGGTTCGATAGCACAACGACGTCGACtgtaa 1323 0.4278 MTRAAPSPSSSLRSHRREGAVLRKKQIFFCNPACLRRVTSFYCCLWTRNPQAAVREIWEYFLGKSGKKDYSTAILERKKSPNRLVVDEAVNDDNSVMSMHPDTMEKLQLFCGDTILIKGKKRRDTVCIALAADTCEEPKIRMNRVVRSNLRVRLGDVVSVHQCLDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYSFLMKQMAQIRELVKLPLRHPQLFKSIGVKPPKAIAVANETGAFFFCINGPEIMSKLVGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERMIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDLALRRFGRFDREIDIGVPDEVGRLEVLRIHTKSMKLSDDIQTFRFKNADFFTHSQCERETGEIYQLPQANRQERKTATQEATTVRGKGLDSDDDSTTGSIAQRRRL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01308 440 PANTHER ATPASE, AAA-TYPE, CORE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 64 202 - -
Adu05g01308 440 PANTHER ATPASE, AAA-TYPE, CORE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 205 375 - -
Adu05g01308 440 CDD AAA 235 350 - -
Adu05g01308 440 Gene3D - 63 165 - -
Adu05g01308 440 PANTHER AAA-FAMILY ATPASE 64 202 - -
Adu05g01308 440 SMART AAA_5 232 353 IPR003593 -
Adu05g01308 440 MobiDBLite consensus disorder prediction 403 440 - -
Adu05g01308 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 374 IPR027417 -
Adu05g01308 440 MobiDBLite consensus disorder prediction 420 440 - -
Adu05g01308 440 Gene3D - 352 376 - -
Adu05g01308 440 Pfam Cell division protein 48 (CDC48), N-terminal domain 83 163 IPR003338 -
Adu05g01308 440 Pfam ATPase family associated with various cellular activities (AAA) 236 350 IPR003959 GO:0005524|GO:0016887
Adu05g01308 440 PANTHER AAA-FAMILY ATPASE 205 375 - -
Adu05g01308 440 Gene3D - 206 351 IPR027417 -
Adu05g01308 440 MobiDBLite consensus disorder prediction 403 419 - -
Adu05g01308 440 SMART CDC48_N_2 83 166 IPR003338 -
Adu05g01308 440 SUPERFAMILY ADC-like 79 163 IPR009010 -
Adu05g01308 440 ProSitePatterns AAA-protein family signature. 321 339 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01308 Adu-Chr5 19300923 19307514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01308 210 374 Calmodulin-binding Proteins AT3G56690 45.055 1.01e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01308 K13525 - sasa:106580383 424.861