Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01257 ATGGTCATGGACACGCCGGAGAGGAACCAGATCAACCCTTCCCTCTCTCGTGTCCAGGATTCCCCTGTATTCAATTTCCTCAACGGTTTGTCGCCTATAAAGACCGAGAAGCCTGCTCAGATTGGTCAAACGTTTAGCTCGCTTAGCTTTCCATCCCCTCCGCGTGCTTTTGCTTCACCCAATCTTACCAGTTTCAAGGAATCAAAAGTGCTCAAGAGGCATAACCCTTTTGGGAAATCAAGTGACGTGGCTATTGCAGATTCATTTCATCCATATCATAACTCGAGGGAATCTCAGGGAAATTTTCATGATGGAATATCTGCAGTTGATGATTCGATTGCTCTACCTGGTGAGCACACAAACTTCTCAGCTGAGATACCACAGGCCTTAAAATATAATAATTGGGGTAACCCTGGCTATGATCCTAGTCATGAGGATAACTCTCTTGATTCAATTGAAGTCCTTAATCAGGAGTCGGGTGAATTTGATCCGAAGGGGCAAGAATTAGAGCATTGGGATAATTTAATCTCTGGAGATACTGACTTCTTCGTTTTCAATTCCCCAAATGAAGCAGCGGCTTTTAAGGATATAATGCAGAAGCCAGATTCCCATCTTATGCCTCTGGTACCGGAATCTTCCATATATAATGGTTTGAGCGATGATAGCAAAGCTAAAATAGAAGACTATCGTCCCGAGCCTTTAGCAGTCACAGACCAAATGCAGGACAAACATTACGTTGCCATGACTAGCAATACAAAGGAGAAAGCAGATGCTGAGTTTGCTTCTGTGATGAACCATAGTAAGCGGAGGCGATGTCTAGACTTTGAGACGGCCAGTGTGCAAAGGAAGAACTCAGATCATAATTTAAAATCCGATTCTCTTGTACATTCTAATGAAAAGCAACTGGTTGCTGCAAAATGCAATAGCAGTTCACAGCAATGCACTATGCCTGCAGTTGGCTTAGATTTGAATGCACTTGCAGCCTTGAAGGGAGACAAAAAAGTCATAAGTAATGACAATTGGCCTTGTGAAATTCATGTTAATCTTCCTAGTTGCACTTCAGTGCAAATCTATACCAGTCATGAACATCATGATCCATTGGCAGTGGAGGTGGATTCATCAGACATTGGGCCTCAGCCAGTTGAGGATAGTTCCCATGCATCAGATTTCACTGTTGATGAAGATGTCAATCAGAATAGTCCCCAAAAGAAAACACATGGAGACTGCAAGCGTTGTAACTGTAAAAAGTCAAAGTGCTTGAAGCTATATTGTGAGTGCTTTGCTGCTCGTACCTACTGCACTGGCAACTGCTCATGTAAGAATTGCCACAACAAACTTGATCATAAAGACGAAGTCCTTCAAGCTCGCAAGCAGATTGAGTCTCGCAACCCTCTGGCTTTTACTCCTAAAGTCATTCCTGAACCTGAAATTGGGAATGACCCAAATAAAACTCCAGCACCATCACGACACAAGAGAGGATGCAACTGCAAGAAATCATCCTGCCAAAAGAAATACTGTGAATGCTTTCAGGCTGGTGTTGGATGTTCCATAAACTGTAGATGCGACACGTGTAAGAACACGTTTGGTAGAAAGGACGGAGTAGAAATTCAAGCAGAAGTAGAAATAGAGACATGTGGTAAAGAGGTGGTTGAAAATTCATCCCAGAAAATTGAAATTCAGAATTCGAATGGGATGTCTAGAGGAAAGGATGTTTGGGACTCTTTGCTCTCAGCCAACTGTTTCAGACCAGGAAAGGATAGATATTCTTGGAGGCAGAGggttgcctcCCTCATACCCTCATACCCACCTACCCACATACCCAAATCTCAGAAACACAAACAGCACTCACTTACCCAGATCCCAGAAACCTACACAGCAGTAACCTTGCTCACCGCCTCTGTGGCTCACCGCCGCTGTTACTTGCTTTGCTCAGTCGCTCACCGCCGTCGTCGCGCAGTCGCTCACCTCGTCGCTCTCCCTCACCGTACTCACTTCACTCGCACTTCTCTCGTTGCCGTCACTCTCCTCGCCGTTCGTCTCTTTGATTTGCAGTCTCCGATCCTTCCTTCCTCTGTCGTCGTCTCACTGGTTTGTTaa 2097 0.4444 MVMDTPERNQINPSLSRVQDSPVFNFLNGLSPIKTEKPAQIGQTFSSLSFPSPPRAFASPNLTSFKESKVLKRHNPFGKSSDVAIADSFHPYHNSRESQGNFHDGISAVDDSIALPGEHTNFSAEIPQALKYNNWGNPGYDPSHEDNSLDSIEVLNQESGEFDPKGQELEHWDNLISGDTDFFVFNSPNEAAAFKDIMQKPDSHLMPLVPESSIYNGLSDDSKAKIEDYRPEPLAVTDQMQDKHYVAMTSNTKEKADAEFASVMNHSKRRRCLDFETASVQRKNSDHNLKSDSLVHSNEKQLVAAKCNSSSQQCTMPAVGLDLNALAALKGDKKVISNDNWPCEIHVNLPSCTSVQIYTSHEHHDPLAVEVDSSDIGPQPVEDSSHASDFTVDEDVNQNSPQKKTHGDCKRCNCKKSKCLKLYCECFAARTYCTGNCSCKNCHNKLDHKDEVLQARKQIESRNPLAFTPKVIPEPEIGNDPNKTPAPSRHKRGCNCKKSSCQKKYCECFQAGVGCSINCRCDTCKNTFGRKDGVEIQAEVEIETCGKEVVENSSQKIEIQNSNGMSRGKDVWDSLLSANCFRPGKDRYSWRQRVASLIPSYPPTHIPKSQKHKQHSLTQIPETYTAVTLLTASVAHRRCYLLCSVAHRRRRAVAHLVALPHRTHFTRTSLVAVTLLAVRLFDLQSPILPSSVVVSLVC 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01257 698 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 3 597 - -
Adu05g01257 698 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 410 445 IPR005172 -
Adu05g01257 698 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 492 527 IPR005172 -
Adu05g01257 698 SMART CXC_2 407 448 IPR033467 -
Adu05g01257 698 SMART CXC_2 489 530 IPR033467 -
Adu05g01257 698 MobiDBLite consensus disorder prediction 373 399 - -
Adu05g01257 698 ProSiteProfiles CRC domain profile. 408 529 IPR005172 -
Adu05g01257 698 MobiDBLite consensus disorder prediction 378 398 - -
Adu05g01257 698 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 3 597 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01257 Adu-Chr5 18209249 18216806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01257 18 536 CPP Transcription Factor Family AT4G14770 37.705 4.35e-92 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Adu05g01257 TCR 3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01257 - - aip:107640306 1028.08