Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01224 ATGATGGGAAGAACAGGAAGCAGTGATGAAAGTGGATTGAAGAAGGGGCCATGGACACCAGAAGAGGACAAGATATTGGTTGATTACATTCAGAGACATGGCCATGGAAGTTGGAGAGCCCTTCCAAAGCTTGCTGGATTGAACAGATGCGGCAAGAGTTGCAGATTAAGGTGGACTAATTACCTCAGACCTGATATCAAACGTGGAAAGTTCTCTGATGAAGAAGAACAACTCATCATCAACTTGCATGCGGTTCTTGGCAACAAGTGGGCAGCAATAGCAAGTCATTTGCCAGGGAGAACAGATAATGAAATAAAGAATTTCTGGAACACACATTTGAAAAAGAAGCTTCTTCAAATGGGATTAGATCCAATGACACACCGTCCAAGAACAGATCACCTTAATCTCCTTACCAATCTCCAACACATTCTTGCTGCTGCTAACATTGTCACCACTTTCACAAACCCTAATCATCAAATCAACACTGCTCTAACCCTTCAAAACATGCTTCAACCCATGCCTCCTGCACCCTCAAATTTACTCAATAATCTTGGATCATCATTATCACTGCCAGATACTCTTCTTTACGAAGGTTTAGGGTTGAATGTAAATGACCATTCTACCCTTCATAACATTATTTATAATGCTTCAAATTCAGCTGCTTCTTCATCTCAGAATCAGTTCCAAAACTTTGATCAACAACAGATGATGATGACGATGATGAATGGTAGCAGAAACAATAATAATAGCAGTAATTGCAGTGAGTCTCAGAATTTTGACGAACAATTTGGTTCAACAAATGCTACTACTACTACTACAGTCACACCATCAAGTTCACTTCCAAATCTGGTTTCAGTTTCAGCCTCACCTGAACGTTCTTCTTCTTCTCCAACCAAGAATAATAATAATAATAATAATATTAACAGTAATTCCACCTTTGAAATCTGGGGAGATTTCATGGATGTGGATCCAAATGATGCGTATTGGAAAGATTTCATTGACCAACAATCTAACCAGCCATGGTCGACAGTCCAATGA 1038 0.395 MMGRTGSSDESGLKKGPWTPEEDKILVDYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHAVLGNKWAAIASHLPGRTDNEIKNFWNTHLKKKLLQMGLDPMTHRPRTDHLNLLTNLQHILAAANIVTTFTNPNHQINTALTLQNMLQPMPPAPSNLLNNLGSSLSLPDTLLYEGLGLNVNDHSTLHNIIYNASNSAASSSQNQFQNFDQQQMMMTMMNGSRNNNNSSNCSESQNFDEQFGSTNATTTTTVTPSSSLPNLVSVSASPERSSSSPTKNNNNNNNINSNSTFEIWGDFMDVDPNDAYWKDFIDQQSNQPWSTVQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01224 345 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Adu05g01224 345 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Adu05g01224 345 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Adu05g01224 345 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Adu05g01224 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Adu05g01224 345 Gene3D - 14 67 - -
Adu05g01224 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Adu05g01224 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 336 - -
Adu05g01224 345 Gene3D - 70 117 - -
Adu05g01224 345 CDD SANT 70 113 IPR001005 -
Adu05g01224 345 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Adu05g01224 345 SMART sant 67 115 IPR001005 -
Adu05g01224 345 SMART sant 14 64 IPR001005 -
Adu05g01224 345 MobiDBLite consensus disorder prediction 241 309 - -
Adu05g01224 345 CDD SANT 17 62 IPR001005 -
Adu05g01224 345 PANTHER MYB TRANSCRIPTION FACTOR 4 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01224 Adu-Chr5 17683046 17685345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01224 2 334 MYB Transcription Factor Family AT5G16770 44.199 8.25e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu05g01224 Myb_DNA-binding 9.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01224 K09422 - gmx:547488 335.109