Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01201 ATGTGTACGTGGCGAGAGCTGAGCGACACTGCTCAATTGAGTGGAATGATGAGGCCGAAGACATATGCGGGTCTCAGTTTGATTGCAACTCTAGCTATCACATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCAATGTTAACGAAGAAGGTTTTCCTGGGTTCTCCTCGGGAAGCCAAGGTAGAAAGGCTTAACGAGCGATCATGGAGGGAGATTATGGAAATCCTCTTTGCCATTACTATTTTTAGGCAGGATTTCTCTGTTACATTCCTTGCCATGGCCACAGCATTGCTGTTGATTCAAGCTTTGCATTGGTTGGCTCAAAAGAGGGTTGACGTATCCTTATACAGTTCTCTGAAGCATCTGCTTCAAACATGGCAACCGTCTGTTTCAATATTCTTTTCTTTTGAGTACATGATACTTGCAACTATAACTGTGTCAGTTTTTGTAAAATATCTTTTCTATATCAGTACCATGCTCATGGAAGGACAATGGGAAAGGAAACCAATCTTCACATTCTACTTGGAACTTATCAGGGACTTGCTTCACTTGTCTACGTATCTTTTCTTCTTCCTTGTAATTTTTATAAACTACGGTGTTCCTCTGCACTTAATACGGGTGCTTTACGAGACATTTAGGAACTTCAAAGTCCGTGTTGAAGATTACATCCGATATTGTAAGATCACTTCAAATATGAAGGACCGTTTTCCAGAGGCAACCCCTGAAGAGCATAATGCAAGTGATGCACCCTGCATTATCTGTCGTGAAGAGATGACTGTTGCCAAGAAACTTATATGTGGACATCTGTTTCATGTTCATTGCCTCCGATCATGGCTGGAGCGGCAACATACTTGCCCTACCTGCAGAGCCCTGGTTGTTCCACCCGAAAATGGGGCAACTGCAACTGGAGGCCAGCAAGGAGCACAATCAGATGCTCATCGACAGGGGACTAGCACTGGAAGCTCAGCTCAAAATGAGGTTGGCGGTGGTGGGGCAACTGATAATTTGAGTCGCCATCAAGCCAGACTTCAAGCTGCTGCTGCTGCTGTTTCAATATACGAGAATTCTTATGTTTACCCCTCCACATCATCTTTAGTATGCTCTCCTGGTGAACAGGCACAAAAGCCGCTTGTTTTCCCTGGTGGACCAATTGTATCCTTTCCTCAAATGGGGCACTTCCATTTGTTTCCTTCCCAAACACATCCAGTTCCTGCAAATCATGGAATGGAGTTTGGAGTTTATCCGAATATGCCAAGTTCGCACCTGGAAGCTCAAAGAAAACTTCTTCAGTACCAGATTGAGATTCTACAAAATCAGCTCCAGCTTTTTGCAGAGGACAAAAGTCAAAGACAAGTAACACCTAATAGATGGTTTCTACGATGCCCTCTGTGGAAGAACACACAAATGCGGTGCGGGTATTTTTAA 1431 0.4382 MCTWRELSDTAQLSGMMRPKTYAGLSLIATLAITYHAFNSRGQFYPAMLTKKVFLGSPREAKVERLNERSWREIMEILFAITIFRQDFSVTFLAMATALLLIQALHWLAQKRVDVSLYSSLKHLLQTWQPSVSIFFSFEYMILATITVSVFVKYLFYISTMLMEGQWERKPIFTFYLELIRDLLHLSTYLFFFLVIFINYGVPLHLIRVLYETFRNFKVRVEDYIRYCKITSNMKDRFPEATPEEHNASDAPCIICREEMTVAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGATATGGQQGAQSDAHRQGTSTGSSAQNEVGGGGATDNLSRHQARLQAAAAAVSIYENSYVYPSTSSLVCSPGEQAQKPLVFPGGPIVSFPQMGHFHLFPSQTHPVPANHGMEFGVYPNMPSSHLEAQRKLLQYQIEILQNQLQLFAEDKSQRQVTPNRWFLRCPLWKNTQMRCGYF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01201 476 Coils Coil 421 441 - -
Adu05g01201 476 PANTHER - 16 49 - -
Adu05g01201 476 PANTHER - 49 114 - -
Adu05g01201 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 298 IPR013083 -
Adu05g01201 476 SMART ring_2 253 290 IPR001841 -
Adu05g01201 476 SUPERFAMILY RING/U-box 233 297 - -
Adu05g01201 476 MobiDBLite consensus disorder prediction 301 333 - -
Adu05g01201 476 CDD RING-H2_synoviolin 250 291 - -
Adu05g01201 476 ProSiteProfiles Zinc finger RING-type profile. 253 291 IPR001841 -
Adu05g01201 476 PANTHER - 117 329 - -
Adu05g01201 476 MobiDBLite consensus disorder prediction 301 337 - -
Adu05g01201 476 Pfam Ring finger domain 253 291 IPR001841 -
Adu05g01201 476 PANTHER RING ZINC FINGER PROTEIN 16 49 - -
Adu05g01201 476 PANTHER RING ZINC FINGER PROTEIN 117 329 - -
Adu05g01201 476 PANTHER RING ZINC FINGER PROTEIN 49 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01201 Adu-Chr5 17244658 17249989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01201 16 456 C3H Transcription Factor Family AT3G16090 54.980 8.37e-179 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01201 K10601 - gmx:100816441 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g01201 05 17244658 17249989 Adu05g01201 05 17244658 17249989 ECH