Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01167 ATGGAAAATCCAACTAGCAGCACCATGCAAGAATGTAACAATGATAATGTGATGGTGCCGCAGTCTTATAGGGGAGTTCGTAAGAGAAAATGGGGCAAATGGGTGTCCGAAATTCGCGAACCGGGGAAGAAAACCAGAATATGGCTAGGGAGCTATGAGCTACCTGAAATGGCGGCTGCAGCCTACGATGTGGCGGCATTGCACCTTAGAGGCCGCTCTGCCAGGCTCAACTTCCCGGAGTTGGTGGAGACTATGCCCCGGCCCGTGAGTTCAAGGGCCGAGGACGTGCAAGCTGCGGCTCAGCAAGCAGCATTAAGATTCAAGAGTACTCCAATTATGTCATTAAATTATTCCTCTACTGAGGTAGATAGTGCCCCTGATAACAAGGGCACTATCCTTCCCGTAAGGATAGGATTGTCTCCTAGTCAGATTCAGGCGATTAATGAATCTCCATTAGACTCGCCAAAAATGTGGATGCGAATGGCTGAAGCATTCATGTTTGGCTTCCATGATCATAATTATCCTCATGATTATTGTGATTATGATTATGGTATGTTGGAGTTGAGTGAATGGGAAGAAATTCAGCATGAATCTTTATGGGATTCATGA 609 0.4631 MENPTSSTMQECNNDNVMVPQSYRGVRKRKWGKWVSEIREPGKKTRIWLGSYELPEMAAAAYDVAALHLRGRSARLNFPELVETMPRPVSSRAEDVQAAAQQAALRFKSTPIMSLNYSSTEVDSAPDNKGTILPVRIGLSPSQIQAINESPLDSPKMWMRMAEAFMFGFHDHNYPHDYCDYDYGMLELSEWEEIQHESLWDS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01167 202 Pfam AP2 domain 23 71 IPR001471 GO:0003700|GO:0006355
Adu05g01167 202 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Adu05g01167 202 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Adu05g01167 202 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Adu05g01167 202 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Adu05g01167 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 10 171 - -
Adu05g01167 202 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Adu05g01167 202 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Adu05g01167 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 171 - -
Adu05g01167 202 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01167 Adu-Chr5 16316112 16316989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01167 6 201 AP2-EREBP Transcription Factor Family AT1G71450 46.429 6.64e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu05g01167 AP2 6.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01167 - - gmx:100788567 250.366