Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01131 ATGGCTAACTTGCTAATAACTTTGTTCTTAATTTCCATTTTTGAATTCTTGTTTCTTGCTAACGCAACAAGAAGCAAAACCACTTCACCAGCTTGTGGAAGCAGATATTGTGGAAGCTCTGAAGTAGCTATTGAGTTCCCTTTCCATTTGACACAGGATCATACTAGCTTTGTTGAAGGAGATGCACGATGCGGGTACCAAGGTTTTGAAGTTTCGTGTAACCAAAGGAATTTGATGATTAGTCTCCCAAATGGAGGAGGAGAATTCATCGTCAAAAACATCTCTCTAGAGCACCAATATATTTGGGTAAACGACCCTAATGAGTGTTTTGCTAAACGGTTCTTGCAGGGCAAGGATCTCATCAAAGATTCACCCTTCCTATGGGGCCTTCCAAATTCAAAGAGAGTGATGTTTTACAATTGCAGCGAATTAGCAGGAATTGATGTTGATCCACAACTACGTCTTCCTTGCCTGAGTGACGATGAGAAGCATTATTATTCTGTTATAGTTTTGTCAGAGTCAGATATTGAGAATGAGAATTATTATAGTTCAAGGTGTAGGAATATTGGGTCTGCTTTGTTTCCCGTTAAGGATGTTTCAGAAGATGATTCTTCAATATCATCACGGCAAATAAGAGATGAACTTGTTCATTTTGATATGAAGTTGCAATGGTTTAGGCCTAGTTGTTATTGTAAGGAGGATCAACACTGTGGCTTCATACCAAATACTGATTTTGACGTTGTTTGTTACAACCACAAAAATCAAGAACAAGATATGTTACTTGAACTTGACAGCGGTTATTCCAATAATAATGGTAATGGGCACATGCAAGCACTTTCCGGTACTAGTGGAAGTCCTCCAAGTTATTATTATGGTGAAAAGGAAGAGAGCAAGTTTGCTATAGGATTGGGAACGCTAGGTATATTAATATTATTATTTTATGTAGCATTTCATATAACTAAGGAGATGAGAGAAGAAAGGTTACGACAGAGAATCATGGAGACCCAACATGCGCGAGCAAGGAGAATGTTGTTAAGCCAACAGCGACAGCTAGGAGAGCTACGCAGATTAAGAATGATGGAATCATCATCAATAATCAGTGAGAGGTACCCTGCCACCAGCGATGAGAATTCAACAATAATAATAGAGTTAGAACAATGTCCAGTTATCCAGCTAGGTGACAGTGGACAATTGCCAACAATGTTAATGGACAACGTTTGCTCTATATGTCTTAGTGAGTACGAGGCTAAAGAAACATTACGGAGCATGCCACAGTGTAATCACTTTTTTCATTCTCATTGTATTGATGCCTGGCTCAAGATGAATGCTACTTGTCCCTTGTGCCGAAAATTGCCAATATGA 1362 0.3891 MANLLITLFLISIFEFLFLANATRSKTTSPACGSRYCGSSEVAIEFPFHLTQDHTSFVEGDARCGYQGFEVSCNQRNLMISLPNGGGEFIVKNISLEHQYIWVNDPNECFAKRFLQGKDLIKDSPFLWGLPNSKRVMFYNCSELAGIDVDPQLRLPCLSDDEKHYYSVIVLSESDIENENYYSSRCRNIGSALFPVKDVSEDDSSISSRQIRDELVHFDMKLQWFRPSCYCKEDQHCGFIPNTDFDVVCYNHKNQEQDMLLELDSGYSNNNGNGHMQALSGTSGSPPSYYYGEKEESKFAIGLGTLGILILLFYVAFHITKEMREERLRQRIMETQHARARRMLLSQQRQLGELRRLRMMESSSIISERYPATSDENSTIIIELEQCPVIQLGDSGQLPTMLMDNVCSICLSEYEAKETLRSMPQCNHFFHSHCIDAWLKMNATCPLCRKLPI 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01131 453 ProSiteProfiles Zinc finger RING-type profile. 407 449 IPR001841 -
Adu05g01131 453 Pfam Ring finger domain 406 449 IPR001841 -
Adu05g01131 453 SMART ring_2 407 448 IPR001841 -
Adu05g01131 453 Pfam Wall-associated receptor kinase galacturonan-binding 32 105 IPR025287 GO:0030247
Adu05g01131 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 452 IPR013083 -
Adu05g01131 453 SUPERFAMILY RING/U-box 401 450 - -
Adu05g01131 453 CDD RING-H2_PA-TM-RING 406 449 - -
Adu05g01131 453 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 8 450 - -
Adu05g01131 453 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01131 Adu-Chr5 15772403 15774502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01131 32 452 C3H Transcription Factor Family AT2G25410 28.235 1.03e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01131 - - adu:107488346 876.7