Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01103 ATGCCTGCGCCTCCTCCTAACTACACTCACCACCGCACCAAACTCGTCAGGATAACAGTTACTGACGCTGATGCCACCGACTCCTCCAGCGACGAAGCACAACTCTCATCCTCCACGCGCCACCACCGACACAGAAAGCTCGTCAACGAGATTCTTATCGAGCCCTGTCAAGTGCCTCCCCGGAAGAGACCCAAGAAGTCATCAGCAAGTACCTCCGCCGCCAAGCCCAGAGCTCCGGCCATTCGCCGCCAACTCTCCGGCAGGAAGTTCCGCGGGGTGAGGCAGAGGCCATGGGGGAAATGGGCCGCGGAGATAAGAGACCCTTCACGGCGCGTGAGGTTATGGTTAGGTACCTACGACACCGCGGAGGAAGCTGCCATGGTGTACGACAACGCGGCCATTAAACTGCGTGGACCCGACGCGCTCACCAATTTCATAACGCCGCCACCAACCACAACGCTGGACAGTAATAATAATAATGAAAATAAAACGGCAGCACCAACGGTTTTGGTAAACGGTTACAGTTCCGGTGATGAGGAGTCTCAAAGCACCAACAACAATCATAGTCAGAGTCACAATCTGTTCTCTCCAACTTCGGTGcttcatcatcatcatcatcatcatcatcatcatcataatcagtgttgttattccttatCGGAGGAAGGTGAATCCACCGTAACGGGAAAAGAGGATGAATATTCGAGCGTGTCGGAGAATAATAAGGTCAAATCTGAGGAAGACGATTCATCATTCCTTCACATTCCGAGTGATGTGCTCTTTGATTTTCAAGTCTCTTCTTCGCCGTTGGTGGTGCCAGATGTTTTTGAAGAAAGCTTGCTCTTCGCCGATGATTGCGGCGGTTTCCTCACTTCTTGTGAGGACTTTGATTTCAGCTTCAAAAGCTGGCACAGAGAGGATGACTTCTTCCAAGATATAACTGATTTATTCCCTTCAGATCCGCTTCTTGCTCTTTGA 978 0.4857 MPAPPPNYTHHRTKLVRITVTDADATDSSSDEAQLSSSTRHHRHRKLVNEILIEPCQVPPRKRPKKSSASTSAAKPRAPAIRRQLSGRKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFITPPPTTTLDSNNNNENKTAAPTVLVNGYSSGDEESQSTNNNHSQSHNLFSPTSVLHHHHHHHHHHHNQCCYSLSEEGESTVTGKEDEYSSVSENNKVKSEEDDSSFLHIPSDVLFDFQVSSSPLVVPDVFEESLLFADDCGGFLTSCEDFDFSFKSWHREDDFFQDITDLFPSDPLLAL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01103 325 MobiDBLite consensus disorder prediction 22 85 - -
Adu05g01103 325 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Adu05g01103 325 MobiDBLite consensus disorder prediction 171 195 - -
Adu05g01103 325 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 12 321 - -
Adu05g01103 325 CDD AP2 89 145 IPR001471 GO:0003700|GO:0006355
Adu05g01103 325 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Adu05g01103 325 Gene3D AP2/ERF domain 88 147 IPR036955 GO:0003700|GO:0006355
Adu05g01103 325 SUPERFAMILY DNA-binding domain 89 145 IPR016177 GO:0003677
Adu05g01103 325 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 321 - -
Adu05g01103 325 MobiDBLite consensus disorder prediction 227 246 - -
Adu05g01103 325 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Adu05g01103 325 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Adu05g01103 325 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01103 Adu-Chr5 14963582 14965066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01103 11 325 AP2-EREBP Transcription Factor Family AT4G23750 42.296 9.78e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu05g01103 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01103 - - ahf:112801434 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g01103 05 14963582 14965066 Adu05g01103 05 14963582 14965066 ECH
Adu05g01103 05 14963582 14965066 Adu03g02685 03 96348798 96350225 PCT