Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01086 ATGGCGAAGGAACTTGAGAACAAAGCCAAAGAGGCATTCTTGGATGACGATTTTGCCCTCGCCGCCGATTGCTACTCAGAAGCCATCAACTTGGATCCCAGCAACCCTCTTCTTTATGCCGACAGAGCCCAAGCCCATATCAAGCTCCCAAACTTCACCGAAGCCGTTTCTGATGCGAACAAAGCCATTCAATTGAGTCCTTCGCTGGCTAAGGCCTACCTTCGTAAGGGAACTGCGTGCATTAAGCTGGAAGAGTATCAAACTGCAAAGGTAGCACTCCAAACCGGTGCCTCTTTTGCTCCCGACGATTCCAGATTCACCAAGCTCATTCAAGATTGTGATCGCTACATTGCAGAAGAATCGAATGATCTTGCTAGCACCTTATTGCCCCGCGTCCCCACAACTCCTGCCGGTAATGGTTCGCATTCGACTGATAGAAGTATAGATTCTACTAAAGAAGCTGAAAGAGACAGTTCGGTACCCCAAATCAATGAAGTTGCAACAACCAGGCCAAAATTCAGACATGAATACTACCAGAGGCCAGAAGAAGTGGTTGTGACGATATTTGCTAAAGGCATACCAGCAGACGACGTAATTGTTGACTTTGGTGAACAGATTATGAGTGTTACTATTGCTGTTCCCGGACAAGAACCCTATCGTTATCAACAACGATTGTTCGGAAAGATAGTACCCGATAAGTGCAGAGTCCTGGTGTTGTCAACTAAAGTTGAAATCCGCCTTGCAAAAGCTGAAGCTCTTAATTGGACATCTCTGGAATATAGCAAGCATGTGCTTCCTCAGAAAATAAATGCGATGACAAATCAACCTGAAAGGCCAACATACCCATCATCAAAGCCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCTGATGAAAAAAGAGGAGAAAGAAGAGAAGCTAGACGGTGATGCTGCTTTGAACAAATTGTTCCGAGATATTTACCAAAATGCAGATGAGGACATGAGAAGAGCTATGAGCAAGTCATTTTTGGAGTCAAATGGAACAGTGCTGTCAACTGACTGGAAAGAAGTAGGATCAAAGAAGGTGGAGAGCAGTCCCCCTGAAGGCCTGGAGTTGAAGAAATGGGAATATTGA 1116 0.4498 MAKELENKAKEAFLDDDFALAADCYSEAINLDPSNPLLYADRAQAHIKLPNFTEAVSDANKAIQLSPSLAKAYLRKGTACIKLEEYQTAKVALQTGASFAPDDSRFTKLIQDCDRYIAEESNDLASTLLPRVPTTPAGNGSHSTDRSIDSTKEAERDSSVPQINEVATTRPKFRHEYYQRPEEVVVTIFAKGIPADDVIVDFGEQIMSVTIAVPGQEPYRYQQRLFGKIVPDKCRVLVLSTKVEIRLAKAEALNWTSLEYSKHVLPQKINAMTNQPERPTYPSSKPRTKDWDKLEALMKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVESSPPEGLELKKWEY 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01086 371 Pfam SGS domain 289 369 IPR007699 -
Adu05g01086 371 MobiDBLite consensus disorder prediction 127 145 - -
Adu05g01086 371 Pfam Tetratricopeptide repeat 70 102 IPR019734 GO:0005515
Adu05g01086 371 Pfam Tetratricopeptide repeat 39 68 IPR019734 GO:0005515
Adu05g01086 371 SMART tpr_5 70 103 IPR019734 GO:0005515
Adu05g01086 371 SMART tpr_5 2 35 IPR019734 GO:0005515
Adu05g01086 371 SMART tpr_5 36 69 IPR019734 GO:0005515
Adu05g01086 371 ProSiteProfiles SGS domain profile. 280 371 IPR007699 -
Adu05g01086 371 CDD p23_CS_SGT1_like 176 259 - -
Adu05g01086 371 ProSiteProfiles CS domain profile. 170 259 IPR007052 -
Adu05g01086 371 MobiDBLite consensus disorder prediction 350 371 - -
Adu05g01086 371 Gene3D - 171 262 IPR008978 -
Adu05g01086 371 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Adu05g01086 371 SUPERFAMILY HSP20-like chaperones 167 265 IPR008978 -
Adu05g01086 371 Gene3D Tetratricopeptide repeat domain 1 127 IPR011990 GO:0005515
Adu05g01086 371 MobiDBLite consensus disorder prediction 349 371 - -
Adu05g01086 371 MobiDBLite consensus disorder prediction 127 166 - -
Adu05g01086 371 PANTHER PROTEIN SGT1 HOMOLOG A 1 371 - -
Adu05g01086 371 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Adu05g01086 371 Pfam CS domain 174 249 IPR007052 -
Adu05g01086 371 PANTHER PROTEIN SGT1 HOMOLOG 1 371 IPR044563 GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01086 Adu-Chr5 14665572 14669059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01086 1 94 U-box Gene Family AT3G07370 34.043 5.67e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01086 K12795 - gmx:100784022 514.612