Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01041 ATGACACTGAGGCCCAAACAGCATAATATATCCAGAATAGGCAAGCTGCTTATTGGATGTGATTTACCAAAAAAGTGTGATATGATGTTGGAGGTTGAGACGGAGCTCGAGGAGTTGAGTTTTGAATTTGATTCATCTGAAGGAGATGGAGTCCATTTATGCCTTTCTTCTTCAAATTGCAACTGTGATGCCACTCTTCTGAAATCCACCCCTGTTTCAGGACGCTGGTCGGAGGAAGAGGACAACCTTTTGATTCAGATAGTCAAGAAGCATGAAGCTAGGAATTGGAAGAAAATAGCTGCGTATCTTTCAGGGCGAACTGAAGCCCAATGCTTACATCGCTGGCAGAAAGTTTTGGATCCTGATCTTGTGAAGGGTTATTGGACAAAGGAGGAGGATGATCGCCTCACTGAGCTAGTAAGAAAGTATGGTTTGAAGAGATGGGCCGAAATTGCAAAATTCTTACCGGGTCGAATTGGGAAGCAATGCCGAGAGAGGTGGCACAATAATCTTGATCCAGCTATAAAGAAAGATGCATGGACGGAGGAAGAGGAATTGGCACTTGCTCACTATCACCAAATATATGGTAGTAAGTGGGCAGTGATTGCAAGGTATCTTCCTGGAAGGTCTGACAACGCCATTAAAAATCATTGGAACCGCTCAATGAAAAAGAAAGGGGATGCATCTTCACATCTTGGGTTTGACCTAAATGTTGCTACTTCCGGTTTTCGCACATCTCCAATAGTTCCAGCTCATGTTTCAGTTAAAGTAGATAGCCATAGTTTCAATGAAATGGATTCGAAGCACAGGGTTGACAACTTCCCAACACACTTGGTTCTTCAAAAGCCCAGTAAATCTCCCAAACGACAGAAAGTTTCTTCCTCAGATGCCAAGAGAGACCAAGTTGGAAATGGAAGCAACAACAAAATCAACAGTACGTGCCATAATGCAGATGACATGAGTAACGACATAGGATGTGGGGACAATAATGACAGCAGAGATACTCGCACAATGTTTGAACAAAGTCCAGAACGTGTACTAAGAAGCTTAGCCATGACCTATGAGAATATTCCTTCTATTATTAGGAAACGAACTCCCACCAAGGCTGAGTGTGCCCAAACTCCTGAAGACGAACGTGTTATTAGTTTACGAAATTTAAAATTGAGCCGGGAGTTTATTCCATCCATTATTACTACACCAAACACTAAAGCCATAGCTAAATCTCTAGAAGGATACATGGAATGA 1245 0.4233 MTLRPKQHNISRIGKLLIGCDLPKKCDMMLEVETELEELSFEFDSSEGDGVHLCLSSSNCNCDATLLKSTPVSGRWSEEEDNLLIQIVKKHEARNWKKIAAYLSGRTEAQCLHRWQKVLDPDLVKGYWTKEEDDRLTELVRKYGLKRWAEIAKFLPGRIGKQCRERWHNNLDPAIKKDAWTEEEELALAHYHQIYGSKWAVIARYLPGRSDNAIKNHWNRSMKKKGDASSHLGFDLNVATSGFRTSPIVPAHVSVKVDSHSFNEMDSKHRVDNFPTHLVLQKPSKSPKRQKVSSSDAKRDQVGNGSNNKINSTCHNADDMSNDIGCGDNNDSRDTRTMFEQSPERVLRSLAMTYENIPSIIRKRTPTKAECAQTPEDERVISLRNLKLSREFIPSIITTPNTKAIAKSLEGYME 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01041 414 Gene3D - 72 124 - -
Adu05g01041 414 SMART sant 72 121 IPR001005 -
Adu05g01041 414 SMART sant 124 173 IPR001005 -
Adu05g01041 414 SMART sant 176 224 IPR001005 -
Adu05g01041 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 119 IPR017930 -
Adu05g01041 414 Gene3D - 125 176 - -
Adu05g01041 414 SUPERFAMILY Homeodomain-like 122 218 IPR009057 -
Adu05g01041 414 MobiDBLite consensus disorder prediction 277 340 - -
Adu05g01041 414 MobiDBLite consensus disorder prediction 297 328 - -
Adu05g01041 414 CDD SANT 128 171 IPR001005 -
Adu05g01041 414 Pfam Myb-like DNA-binding domain 177 219 IPR001005 -
Adu05g01041 414 Pfam Myb-like DNA-binding domain 74 119 IPR001005 -
Adu05g01041 414 Pfam Myb-like DNA-binding domain 125 171 IPR001005 -
Adu05g01041 414 ProSiteProfiles Myb-like domain profile. 68 119 IPR001005 -
Adu05g01041 414 CDD SANT 179 220 IPR001005 -
Adu05g01041 414 ProSiteProfiles Myb-like domain profile. 172 222 IPR001005 -
Adu05g01041 414 PANTHER TRANSCRIPTION REPRESSOR MYB5 73 281 - -
Adu05g01041 414 SUPERFAMILY Homeodomain-like 70 125 IPR009057 -
Adu05g01041 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 176 226 IPR017930 -
Adu05g01041 414 Gene3D - 178 233 - -
Adu05g01041 414 ProSiteProfiles Myb-like domain profile. 120 171 IPR001005 -
Adu05g01041 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 175 IPR017930 -
Adu05g01041 414 PANTHER MYB PROTEIN-RELATED 73 281 - -
Adu05g01041 414 CDD SANT 75 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01041 Adu-Chr5 14048747 14051148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01041 72 364 MYB Transcription Factor Family AT5G02320 27.103 6.93e-20 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu05g01041 Myb_DNA-binding 1.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01041 - K09420 aip:107643059 752.666