Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00988 ATGGGGAGACAACCATGCTGTGACAAAGTTGGGGTGAAGAAAGGTCCATGGACAAGTGAAGAAGATAAGAAGCTTATGAACTTCATCATGAGCAACGGACAGTGCTGTTGGAGAACTGTGCCTAAGCTTGCAGGCCTTAAGCGTTGTGGAAAGAGCTGCCGTCTTCGTTGGACCAATTATCTTCGCCCTGACTTGAAGAGAGGCCTCCTCACTCATTCTGAGGAGCAACTTGTCATCGATCTCCATGCTCGTCTTGGCAACAGGTGGTCTAAGATAGCTTCAAGGTTACCAGGGAGGACAGATAATGAGATTAAGAATCATTGGAACACACACATCAAGAAAAAGCTCCTTAAGATGGGTATTGACCCTGTTACTCATGAACCTCTTGCTAAGCAACAGCTAGTTTCATCATCATCATCTTCATCCGAATCAGCAGAGCAATTGCCAGAACCTCAACAACAGCTCAAGGAAACTGTTGTTAACAAGAACGATAATAATGGGGTACCGGTTCCCATCAATTCACAGCAGGAGAACTCGTCGAGTTCGTCACCACCAACTGAAAACTCTTGTTCTGCATCGGGGGATGGGGATGAATCTCTAATATTGAACAGCTTGTGGCTTGATGATACTCCACTCATTGATGCATTATGGGATACTACTCCTACATCTTGTCCCTCACTAGCCGTCACCCTCCCTAAACCCCCCTTCCTCACTCACACATGGACACAAACTCACAACACACACAAATCACATGAACAAAGAAGAGAAGAATGGAGGGAGAGCTGCACCGTGAGGGAGAAGAGAGGACCGCCGCTGCGTGTCCTGCCGCTGCCCTCTCCACCGAGCCACCGAATCCGCCACACCTCGTTGCCAGTTGCTGCCGTCATCTACAACGATGAAGGAGAGAGAAAGAGGCGAACGCGAGGAGAGAGAAGGAAGCCTTTGTGTTGTTGTTATCGTGCTGGAGGGCTAGCTGTCGGGGGAGTTGCTGCGACGAGCTCACCGCTGCCGAAGGCCCGTCGCCGTCCGTGGAAAGTCGTCGCCGTCTGGGTCACTGCCGGAGGAAGTGAGCTTGCACAAGGGTTTGCTGGAGTGGCTCACCGCTGCCGCAAGTGTCACCGCACCTCTGGCTGTCGGGAAGTCACGTTGAGGTCGCCGTTCTTCTGTTGTCGCCGCTGTCGGGGTTTTTGGTCAATGGATATGGCACTGTTGTTGCCAGAACCACCACTAGTACTGCCGCTACTTGTTTCTCTTAAGTCGagtcgttgtggttgttga 1278 0.5047 MGRQPCCDKVGVKKGPWTSEEDKKLMNFIMSNGQCCWRTVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLTHSEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLAKQQLVSSSSSSSESAEQLPEPQQQLKETVVNKNDNNGVPVPINSQQENSSSSSPPTENSCSASGDGDESLILNSLWLDDTPLIDALWDTTPTSCPSLAVTLPKPPFLTHTWTQTHNTHKSHEQRREEWRESCTVREKRGPPLRVLPLPSPPSHRIRHTSLPVAAVIYNDEGERKRRTRGERRKPLCCCYRAGGLAVGGVAATSSPLPKARRRPWKVVAVWVTAGGSELAQGFAGVAHRCRKCHRTSGCREVTLRSPFFCCRRCRGFWSMDMALLLPEPPLVLPLLVSLKSSRCGC 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00988 425 Gene3D - 70 162 - -
Adu05g00988 425 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 226 - -
Adu05g00988 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Adu05g00988 425 CDD SANT 16 61 IPR001005 -
Adu05g00988 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Adu05g00988 425 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Adu05g00988 425 Gene3D - 12 67 - -
Adu05g00988 425 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Adu05g00988 425 MobiDBLite consensus disorder prediction 243 264 - -
Adu05g00988 425 CDD SANT 71 112 IPR001005 -
Adu05g00988 425 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Adu05g00988 425 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Adu05g00988 425 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Adu05g00988 425 SMART sant 13 63 IPR001005 -
Adu05g00988 425 SMART sant 66 114 IPR001005 -
Adu05g00988 425 MobiDBLite consensus disorder prediction 131 195 - -
Adu05g00988 425 MobiDBLite consensus disorder prediction 245 264 - -
Adu05g00988 425 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00988 Adu-Chr5 12952116 12957170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00988 1 217 MYB Transcription Factor Family AT4G12350 59.641 4.52e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu05g00988 Myb_DNA-binding 2.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00988 K09422 - gmx:100818077 309.686