Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00919 ATGTCCAACACACGCTCCCCGACGCGTTCCTCCGAGGACATCGTCGATTCCACGCCGTTTCTCGGCAATACCGGGACCGGCGCTGCCACCGACGAATTCAATTCAGGCCGCCGATTCGTACGGCGGCAGAGCCTCCGACAGGCGGCGAGGTTCCTCCGGCAGGCGAGCGGGAGGAGGATGATGAGAGAGCCGTCGATGGTGGTGCGGGAGACGGCGGCGGAGCAATTGGAGGAGAGGCAGAGCGATTGGGCGTATTCGAAGCCGGTGGTGATCCTCGACATGGTTTGGAACTTCGCGTTCGTCGTGGTGGCGGCGACGGTGTTGTTTCTGAGCAGGAAAGAATCTCCGGAAATGCCTCTGAGGCTGTGGATTATAGGTTACGCTATGCAGTGCGTCCTTCACATGGTTTGCGTTTGCGTTGAGTACAGGAGAAGGAGGAGGATCCAGCGGTCACAGTCTCTGAACGGTGGTGGAGAAGAAAGGGTTGGAAGCAGTGGGAATTTGAGTTCACCTTCGAGGGAGGGCTCTTCGCACTATGTCACATTGGGCCAGTTGGATGAAGACAGTACTAGTGTTGCAAAGCATTTGGAGTCTGCAAATACGATGTTTTCTTTTATTTGGTGGATTATTGGGTTCTACTGGGTATCAGCTGGTAGTCAATCTTTAGTCGAAGAATCTCCTCTTCTTTACTGGCTATGTATAATCTTCCTTGGTTTTGATGTCTTCTTTGTTGTATTCTGTGTTGCACTGGCATGTATTATTGGTATCGCTGTTTGCTGTTGTCTTCCATGCATCATTGCCCTTCTTTATGCAGTTGCAGACCAGGAAGGAGCATCAAAAGAGGATATTGAGCAGCTATCAAAGTATAAATTTCGGAAAGTTGAAAACAATGAGAAACTTGCTGGAAATACACAAGGACCTGTTGGAGGAGTAATGACCGAATGCCGATCTGACTCACCTAGTGAACATGTTCTTGCTGAGGAGGACGCGGAATGTTGCATCTGCCTTTCTTCCTATGACGATGGAGTTGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGCTCCTGCGTTGATAAATGGCTGTATATCAATGCTACTTGCCCACTCTGCAAGTATAACATCTTGAAAAGTAGCAACCTCGGTCAAGAGGAAGTGTAG 1164 0.4974 MSNTRSPTRSSEDIVDSTPFLGNTGTGAATDEFNSGRRFVRRQSLRQAARFLRQASGRRMMREPSMVVRETAAEQLEERQSDWAYSKPVVILDMVWNFAFVVVAATVLFLSRKESPEMPLRLWIIGYAMQCVLHMVCVCVEYRRRRRIQRSQSLNGGGEERVGSSGNLSSPSREGSSHYVTLGQLDEDSTSVAKHLESANTMFSFIWWIIGFYWVSAGSQSLVEESPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKYKFRKVENNEKLAGNTQGPVGGVMTECRSDSPSEHVLAEEDAECCICLSSYDDGVELRQLPCGHHFHCSCVDKWLYINATCPLCKYNILKSSNLGQEEV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00919 387 CDD RING-H2_RNF111_like 331 375 - -
Adu05g00919 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Adu05g00919 387 MobiDBLite consensus disorder prediction 153 177 - -
Adu05g00919 387 Pfam Ring finger domain 331 373 IPR001841 -
Adu05g00919 387 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 387 - -
Adu05g00919 387 MobiDBLite consensus disorder prediction 1 28 - -
Adu05g00919 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 385 IPR013083 -
Adu05g00919 387 PANTHER TARGET OF ERK KINASE MPK-1 5 387 - -
Adu05g00919 387 SMART ring_2 332 372 IPR001841 -
Adu05g00919 387 SUPERFAMILY RING/U-box 323 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00919 Adu-Chr5 11751628 11755675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00919 24 380 C3H Transcription Factor Family AT1G68070 49.167 4.11e-120 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00919 - - gmx:100790497 590.497