Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00891 ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCCGCTATCGTTTTCTGCGCCGCTGATGAGGCCGCACTCTGCCGTGCCTGCGATGAGAAGGTTCACATGTGTAATAAACTTGCTAGCAGGCATGTAAGAGTGGGTCTGGCAAGTCCAAGCGATGTGCCTCGTTGTGATATATGCGAGAATGCACCTGCATTCTTCTATTGCGAGACAGATGGAAGCTCGCTTTGTTTGCAGTGCGACATGATAGTTCATGTTGGTGGTAAAAGAACACATGGAAGATATCTTCTATTTAGGCAAAGAGTTGAGTTTCCAGGAGATAAACCTAGTAACATAGAAAACCCAGCTTCTCAACCTATGGAACCAGGGGAGACTAAGAGGGGACAAAATCCACTTCCCAAACTAAAAATGGGGGAGAAGCAACAAAACCACAGGATGCCGCTGCTTTCAACACCAGATCCTGATGCTGACGGACATGCCAAGATGGAGACTAAAATGATTGATTTGAACATGAAGCCTAACAGAATACATGAACAAGCATCAAATAATCAGCCATAA 555 0.4577 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPSNIENPASQPMEPGETKRGQNPLPKLKMGEKQQNHRMPLLSTPDPDADGHAKMETKMIDLNMKPNRIHEQASNNQP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00891 184 CDD Bbox1_BBX-like 4 47 - -
Adu05g00891 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Adu05g00891 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Adu05g00891 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Adu05g00891 184 Gene3D Classic Zinc Finger 2 91 - -
Adu05g00891 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Adu05g00891 184 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 183 - -
Adu05g00891 184 CDD Bbox1_BBX-like 56 96 - -
Adu05g00891 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Adu05g00891 184 MobiDBLite consensus disorder prediction 105 159 - -
Adu05g00891 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Adu05g00891 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Adu05g00891 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00891 Adu-Chr5 11289148 11291650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00891 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.749 3.20e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Adu05g00891 zf-B_box 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00891 - - gmx:100780544 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00891 05 11289148 11291650 Adu05g00891 05 11289148 11291650 ECH
Adu03g00528 03 4938335 4939972 Adu05g00891 05 11289148 11291650 ECH