Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00888 ATGGTTTACCAGACACCGAAAGTCAAGGTCTGTTCGTCATTACTTGATCGATTGAGACATGGTGGTGGTTGTGATTGTGGTGGCTGGGACATGGCGTGTCCCCTTATTCTTTTAGGCAATCTTAGTATTCAATTTTTCGAATACTGCCCTCTTATGGAGGAATATCAAGCACTGGCACTGTTCATTCAGGTACATCTTGGCGGCGTTGAAGGCAGGGACAACCTGGGAACATGGAATCTGCTATGGAGTCCAATCCAATTCTATGTGCCCACTCACCTCACCAGACCGACCAAGCCCCAATTCCTCTCAATCCCAATCTCAATCCTAGCTAGGATGGAGCAACAACAGCTTCAGCAGAGTGGAGCTGCCACCGCCGGAGCAGCACCGCCGGTGGAGGGAGCTAGGGATTTGGGAGATTCGCAGCTCGTTGGAGTTCCCGCTGCGGTTGACGGCGATGTTGTCATGGCGGAGAGGGACGGCAGCGGGAGTGTTCCCAATCTGGAGGTGGCCGTCGGGGACGGCGGCGCCACGGCGGTTAAGAGGAAGCGGGGTCGTCCGGCGAAGGGTGCTCCGAGGGCGTCGGCGACGGGAGCGGCCGCGAGGCTGCAGCAGAAGAAGGAGGAAGAGGAAGAGGAGGATGTTTGCTTCATATGCTTCGATGGTGGAAGCTTAGTTCTTTGTGATCGCCGGGGTTGTCCTAAAGCATATCATCCCGCGTGTATTAAGCGAGACGAGGCCTTCTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCTTTTGTCAGAAGGCCTCCCAATTTTTGTGCTATACTTGTACATATTCGGTGTGCAAGAGTTGTACAAAATATGCTGATTTTGTGTGTGTCAGAGAAAATAAAGGTTTGTGCGGAATATGCATGAGAACTATAATGCTGATTGAAAACAATGGCCAGGGAAATTCGGAGAAGTGTGAAGTGGATTTTGATGACAAAACCAGCTGGGAATATCTTTTCAAGGTGTATTGGATGTTTTTGAAAGGGAAGATATCTTTAACATTTGATGAGCTCCTTCGAGCTAAAAACCCTTGGACAGGTGTTTCTCCATTGGGTGGTAAGGTTGAATGTCCCCGTGAAATTTATAATACTAAGGATGACAAAGGTTCTGGTTCAGAGAACTCCTGTATTGACATAGAATCAAATAATTTGAAAAACAAGAAATCTAGGAGACAGCCAATGCTTCATAGCAATGGGGTTGGCTCCGATATGATAACTTCAGCCGGTGACAACTGTGTGCCTTTGCCTGAATGCTCAAATTGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAGTGGTGATACATCTCGCCTGTCTCAATTTGATGTCCAGGGTCTCTTGTTAGAGTATGTGAAGAAGAACAATCTTCGAGACCCCCAGCAGAAATGCCAAATTGTTTGTGATCATAGACTACTAAAATTGTTTGGAAGAGCACGTGTTGGTCACATTGAAATGTTAAAGCTCCTTGAACCCCACTTTCTTACAAAAGAGAATGGCCCTGCAGAAGATACACTTAGAGCAGGAGTCACGAACACTGTTGCTAGCGAAGGGGAGGCAAAAGACAATTGCAATAAGCAGTTGATGTTAGTTGATGATAAGGAATGTAAAACAGATAAAAAAGATGATGTGCATTTGCCACAAAATAATCCAGATGTGTATGCTGCAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTTTTGGAAAATCTAACTGAAGATGCTGAAAGTGTTCGTGACAAGGTTGTTGGTTCATTTGTGCGGATAAGGATCACTAGTAGTGACAAAAAACAAGAGATGTATAGGCTTGTGCAAGTTGTAGGTACAAGTAAGGCTGCTGAGCCTTACAAAATTGGAACAAGAACAACTGATATGATGCTTGAGATTTTAAACTTAAATAGGAAGGAGGCCATATCAATAGATGAGATTTCAAATCAGGAGTTCTCTGAGGATGAATGCAAGCGCTTGCGTCAAAGTATAAAATATGGGCTTTCCAATAGATTGACTGTGGGTGAGATCATGGACAAAGCATTGACATTTCAAGCAATGAGAGTTAATGAT 2121 0.4503 MVYQTPKVKVCSSLLDRLRHGGGCDCGGWDMACPLILLGNLSIQFFEYCPLMEEYQALALFIQVHLGGVEGRDNLGTWNLLWSPIQFYVPTHLTRPTKPQFLSIPISILARMEQQQLQQSGAATAGAAPPVEGARDLGDSQLVGVPAAVDGDVVMAERDGSGSVPNLEVAVGDGGATAVKRKRGRPAKGAPRASATGAAARLQQKKEEEEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSFCQKASQFLCYTCTYSVCKSCTKYADFVCVRENKGLCGICMRTIMLIENNGQGNSEKCEVDFDDKTSWEYLFKVYWMFLKGKISLTFDELLRAKNPWTGVSPLGGKVECPREIYNTKDDKGSGSENSCIDIESNNLKNKKSRRQPMLHSNGVGSDMITSAGDNCVPLPECSNWASKELLEFVAHMKSGDTSRLSQFDVQGLLLEYVKKNNLRDPQQKCQIVCDHRLLKLFGRARVGHIEMLKLLEPHFLTKENGPAEDTLRAGVTNTVASEGEAKDNCNKQLMLVDDKECKTDKKDDVHLPQNNPDVYAAINAHNINLIYLRRSLLENLTEDAESVRDKVVGSFVRIRITSSDKKQEMYRLVQVVGTSKAAEPYKIGTRTTDMMLEILNLNRKEAISIDEISNQEFSEDECKRLRQSIKYGLSNRLTVGEIMDKALTFQAMRVND 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00888 707 SUPERFAMILY FYVE/PHD zinc finger 208 267 IPR011011 -
Adu05g00888 707 SMART PHD_3 214 260 IPR001965 -
Adu05g00888 707 Pfam SWIB/MDM2 domain 437 510 IPR003121 -
Adu05g00888 707 Gene3D SWIB/MDM2 domain 429 518 IPR036885 -
Adu05g00888 707 MobiDBLite consensus disorder prediction 178 205 - -
Adu05g00888 707 CDD SWIB-MDM2_like 435 510 - -
Adu05g00888 707 Pfam Plus-3 domain 577 680 IPR004343 GO:0003677
Adu05g00888 707 ProSiteProfiles Zinc finger PHD-type profile. 212 278 IPR019787 -
Adu05g00888 707 ProSiteProfiles SWIB/MDM2 domain profile. 429 512 IPR003121 -
Adu05g00888 707 PANTHER UNCHARACTERIZED 122 707 - -
Adu05g00888 707 SMART rtf1 572 682 IPR004343 GO:0003677
Adu05g00888 707 SMART swib_2 437 515 IPR019835 -
Adu05g00888 707 Coils Coil 192 212 - -
Adu05g00888 707 SUPERFAMILY Plus3-like 573 700 IPR036128 GO:0003677
Adu05g00888 707 PANTHER BNAC08G48800D PROTEIN 122 707 - -
Adu05g00888 707 Gene3D - 573 702 IPR036128 GO:0003677
Adu05g00888 707 CDD PHD5_NSD 214 259 - -
Adu05g00888 707 SUPERFAMILY SWIB/MDM2 domain 435 512 IPR036885 -
Adu05g00888 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 305 IPR013083 -
Adu05g00888 707 ProSiteProfiles Plus3 domain profile. 572 705 IPR004343 GO:0003677
Adu05g00888 707 Pfam Domain of unknown function (DUF3527) 11 63 IPR021916 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00888 Adu-Chr5 11221451 11226160 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00888 208 292 PHD Transcription Factor Family AT4G14920 34.118 1.52e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Adu05g00888 Plus-3 4.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00888 - - gmx:100801151 858.981