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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Adu05g00888
ATGGTTTACCAGACACCGAAAGTCAAGGTCTGTTCGTCATTACTTGATCGATTGAGACATGGTGGTGGTTGTGATTGTGGTGGCTGGGACATGGCGTGTCCCCTTATTCTTTTAGGCAATCTTAGTATTCAATTTTTCGAATACTGCCCTCTTATGGAGGAATATCAAGCACTGGCACTGTTCATTCAGGTACATCTTGGCGGCGTTGAAGGCAGGGACAACCTGGGAACATGGAATCTGCTATGGAGTCCAATCCAATTCTATGTGCCCACTCACCTCACCAGACCGACCAAGCCCCAATTCCTCTCAATCCCAATCTCAATCCTAGCTAGGATGGAGCAACAACAGCTTCAGCAGAGTGGAGCTGCCACCGCCGGAGCAGCACCGCCGGTGGAGGGAGCTAGGGATTTGGGAGATTCGCAGCTCGTTGGAGTTCCCGCTGCGGTTGACGGCGATGTTGTCATGGCGGAGAGGGACGGCAGCGGGAGTGTTCCCAATCTGGAGGTGGCCGTCGGGGACGGCGGCGCCACGGCGGTTAAGAGGAAGCGGGGTCGTCCGGCGAAGGGTGCTCCGAGGGCGTCGGCGACGGGAGCGGCCGCGAGGCTGCAGCAGAAGAAGGAGGAAGAGGAAGAGGAGGATGTTTGCTTCATATGCTTCGATGGTGGAAGCTTAGTTCTTTGTGATCGCCGGGGTTGTCCTAAAGCATATCATCCCGCGTGTATTAAGCGAGACGAGGCCTTCTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCTTTTGTCAGAAGGCCTCCCAATTTTTGTGCTATACTTGTACATATTCGGTGTGCAAGAGTTGTACAAAATATGCTGATTTTGTGTGTGTCAGAGAAAATAAAGGTTTGTGCGGAATATGCATGAGAACTATAATGCTGATTGAAAACAATGGCCAGGGAAATTCGGAGAAGTGTGAAGTGGATTTTGATGACAAAACCAGCTGGGAATATCTTTTCAAGGTGTATTGGATGTTTTTGAAAGGGAAGATATCTTTAACATTTGATGAGCTCCTTCGAGCTAAAAACCCTTGGACAGGTGTTTCTCCATTGGGTGGTAAGGTTGAATGTCCCCGTGAAATTTATAATACTAAGGATGACAAAGGTTCTGGTTCAGAGAACTCCTGTATTGACATAGAATCAAATAATTTGAAAAACAAGAAATCTAGGAGACAGCCAATGCTTCATAGCAATGGGGTTGGCTCCGATATGATAACTTCAGCCGGTGACAACTGTGTGCCTTTGCCTGAATGCTCAAATTGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAGTGGTGATACATCTCGCCTGTCTCAATTTGATGTCCAGGGTCTCTTGTTAGAGTATGTGAAGAAGAACAATCTTCGAGACCCCCAGCAGAAATGCCAAATTGTTTGTGATCATAGACTACTAAAATTGTTTGGAAGAGCACGTGTTGGTCACATTGAAATGTTAAAGCTCCTTGAACCCCACTTTCTTACAAAAGAGAATGGCCCTGCAGAAGATACACTTAGAGCAGGAGTCACGAACACTGTTGCTAGCGAAGGGGAGGCAAAAGACAATTGCAATAAGCAGTTGATGTTAGTTGATGATAAGGAATGTAAAACAGATAAAAAAGATGATGTGCATTTGCCACAAAATAATCCAGATGTGTATGCTGCAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTTTTGGAAAATCTAACTGAAGATGCTGAAAGTGTTCGTGACAAGGTTGTTGGTTCATTTGTGCGGATAAGGATCACTAGTAGTGACAAAAAACAAGAGATGTATAGGCTTGTGCAAGTTGTAGGTACAAGTAAGGCTGCTGAGCCTTACAAAATTGGAACAAGAACAACTGATATGATGCTTGAGATTTTAAACTTAAATAGGAAGGAGGCCATATCAATAGATGAGATTTCAAATCAGGAGTTCTCTGAGGATGAATGCAAGCGCTTGCGTCAAAGTATAAAATATGGGCTTTCCAATAGATTGACTGTGGGTGAGATCATGGACAAAGCATTGACATTTCAAGCAATGAGAGTTAATGAT
2121
0.4503
MVYQTPKVKVCSSLLDRLRHGGGCDCGGWDMACPLILLGNLSIQFFEYCPLMEEYQALALFIQVHLGGVEGRDNLGTWNLLWSPIQFYVPTHLTRPTKPQFLSIPISILARMEQQQLQQSGAATAGAAPPVEGARDLGDSQLVGVPAAVDGDVVMAERDGSGSVPNLEVAVGDGGATAVKRKRGRPAKGAPRASATGAAARLQQKKEEEEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSFCQKASQFLCYTCTYSVCKSCTKYADFVCVRENKGLCGICMRTIMLIENNGQGNSEKCEVDFDDKTSWEYLFKVYWMFLKGKISLTFDELLRAKNPWTGVSPLGGKVECPREIYNTKDDKGSGSENSCIDIESNNLKNKKSRRQPMLHSNGVGSDMITSAGDNCVPLPECSNWASKELLEFVAHMKSGDTSRLSQFDVQGLLLEYVKKNNLRDPQQKCQIVCDHRLLKLFGRARVGHIEMLKLLEPHFLTKENGPAEDTLRAGVTNTVASEGEAKDNCNKQLMLVDDKECKTDKKDDVHLPQNNPDVYAAINAHNINLIYLRRSLLENLTEDAESVRDKVVGSFVRIRITSSDKKQEMYRLVQVVGTSKAAEPYKIGTRTTDMMLEILNLNRKEAISIDEISNQEFSEDECKRLRQSIKYGLSNRLTVGEIMDKALTFQAMRVND
707
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Adu05g00888
707
SUPERFAMILY
FYVE/PHD zinc finger
208
267
IPR011011
-
Adu05g00888
707
SMART
PHD_3
214
260
IPR001965
-
Adu05g00888
707
Pfam
SWIB/MDM2 domain
437
510
IPR003121
-
Adu05g00888
707
Gene3D
SWIB/MDM2 domain
429
518
IPR036885
-
Adu05g00888
707
MobiDBLite
consensus disorder prediction
178
205
-
-
Adu05g00888
707
CDD
SWIB-MDM2_like
435
510
-
-
Adu05g00888
707
Pfam
Plus-3 domain
577
680
IPR004343
GO:0003677
Adu05g00888
707
ProSiteProfiles
Zinc finger PHD-type profile.
212
278
IPR019787
-
Adu05g00888
707
ProSiteProfiles
SWIB/MDM2 domain profile.
429
512
IPR003121
-
Adu05g00888
707
PANTHER
UNCHARACTERIZED
122
707
-
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Adu05g00888
Adu-Chr5
11221451
11226160
Dispersed/Proximal
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Adu05g00888
208
292
PHD Transcription Factor Family
AT4G14920
34.118
1.52e-07
53.1
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TR
SWI or SNF-BAF60b
Adu05g00888
Plus-3
4.6e-25
No_clan
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Adu05g00888
-
-
gmx:100801151
858.981
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