Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00887 ATGCGTGAAATTCCAGAGGTACACTCTGACCCAAATCTGGATTTGATGTTCGAGTCTGATGAAGATGCGGGAGAGTCAGATGAAAGGAAGCAAGATGGCAATATATGGTCAAAGTATCCTGGTTTTGACAGAAAAGAGAAGGAGCCCACTTTGCCTAAAAGTTGTGATAGTGTCTTGAATGATGATGGATGCAGAACACAAGATTTTTCTGCTGCTGCCCGTGAACAGAATGGCAATGCCTGCGTGACAAAAAGTCAGATAAAACCTAATGAGACAGTGTTTGATGATGACCCTAATGTAGTTGTGAAATCAGAACCATCTGGTGTTGCGTTGGACATTTCATTGTCTCCTCAATCTGTAGGGGTAGAACAGTCATTCAATGATTTTGTGAATGATAAATCATGGCATTATCAGGACCCAACTGGGAAGGTTCAAGGACCTTTTTCCATGTTGCAACTGTTTAAGTGGAATGCAAGTGGAGGTTTCCCTCCTAATCTCAGGATATGGAGGATAAATGAAAAACAAGATAGCTCTATATTGTTAACCGATGCCCTAAGTGGGAAGTGTTCCAAAAATGTGTCAATGCCATATTTCAGCCAACTGCTGTCTTTGGGGATCAGTGGTACAGTGGATACCAAAGAGGATAGTAAAGATTATAGTCAGGATGGTTGCAGCACTGCAGCAAGGAATGAAACTCATTCAGACAACCAAATTAATGAGCAGAACAGGGAGCTAAAGGTGGATGATACTCGTACCCAGTCTGATGGTAAAGATGAATCTGTTAGGAGCAATGGATGGCAGGAACAGCCCCATGCATACCATCCACAACCTTCAGTGGCCATTTCTGAGAATATGAAGGAGAACTCTGATAAATTAAATGAAGGTAATCGGATTGGGGGAAACTCTGCAGATAAAGGGAATCCTGGTTTGAACAGGACTTCTGATGGTCAGAGTAACAGTGGGCAGAGTTACCAGAAGCAATCATACAGTGAAGATAATTCAGGGCAATCTTCTGAACAGAACTGGAGAGGCCCTCGTGTTAACAATTCTTCCAATTGTGCGGTTACCACATCAGCTGAAGTTTTGGTTACAAAGACATCACCACCTAAGCTAGGATTTGATTTACATAGTTCTCCATCCCATCCTGACCAGAACTGGATAGGCCCTCATGTAAATACTTCTTCTGATTGTGTGGTTCCCACATCAGCTGAAGTTTCTGTGCCAAAGACATCACCACCTAAGCTAGGATTTGATTTGCATATTCCTCCATCACAGCTTGAACAAGACTGGAGAGATCCTCATGTAAATACTAATTCCAATTGTGTGGTTACTACATCAGCTGAAGTTTCTGTGACAAAGATATCACCACTTAAGCTAGGATTTGATTTGCATAGTCCCCCATCCCATCCTTCGTGGCAAGCATTCATCGGTGAGACCACTGACTTTAGCTCATTAGTTGACGTTGATGAATCAGTCTCAGATCTGTTAGCTGAGGTGGAAGCAATGGAATCACTTGGTGGTGGTGGTGGTGGCGGTGGCGGCGGCGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGTAAAGGTGATGCACTTAGCTCCACTGGTGATTTGCACTTGCAATCTCAGTCAACAGCAGCAGAGGAACCATTGCGGCAAGCAGATATACATCATCATCACCATCATCATCATCATCATCAGAGAGTATCTGGGGAACATTCTTCAAGGAGTTCTGAAGTTAAGGTGGGTACAAAGAGCATTAGTGTTTCAGGTTATCAATGGGAATCAGGCTCAGAAAATTCAACCATTGGTCCATCGACTGCAACCTGGAGCATTGCTACAGACCCCACTTGGAGAGTCGGGTCAGAGAATACAAACTTGGGATGGAGTGGAATGGATAGAGGAAATGTGAACATTGGCTGGGGTGTGGGGCAGTCAGCAGTGCAGGAGAACAGGAGCACAAGTTCATACACTCCTACAGTTTCTCCAAGCTTTGGTGGAAGTCAAGCAAGATATGGCAGCGATCGACCTTCTGTGCCTAGAGATCGGGGTTTTCATGGTCATGGTAGGGAATCAGCTGTTGCTAGAGGCAGAACTGCGTGGAACCGGCAAACTTCATTTGGTGTTGGAAACGGAGGCTCACACAGGCCTCTGCCCAAAGGGCAACGTGTCTGTAAATTTTATGAAAGTGGGCGCTGTAAGAAGGGGGCATCCTGTGATTACTTTCACCCATGA 2238 0.4468 MREIPEVHSDPNLDLMFESDEDAGESDERKQDGNIWSKYPGFDRKEKEPTLPKSCDSVLNDDGCRTQDFSAAAREQNGNACVTKSQIKPNETVFDDDPNVVVKSEPSGVALDISLSPQSVGVEQSFNDFVNDKSWHYQDPTGKVQGPFSMLQLFKWNASGGFPPNLRIWRINEKQDSSILLTDALSGKCSKNVSMPYFSQLLSLGISGTVDTKEDSKDYSQDGCSTAARNETHSDNQINEQNRELKVDDTRTQSDGKDESVRSNGWQEQPHAYHPQPSVAISENMKENSDKLNEGNRIGGNSADKGNPGLNRTSDGQSNSGQSYQKQSYSEDNSGQSSEQNWRGPRVNNSSNCAVTTSAEVLVTKTSPPKLGFDLHSSPSHPDQNWIGPHVNTSSDCVVPTSAEVSVPKTSPPKLGFDLHIPPSQLEQDWRDPHVNTNSNCVVTTSAEVSVTKISPLKLGFDLHSPPSHPSWQAFIGETTDFSSLVDVDESVSDLLAEVEAMESLGGGGGGGGGGGGLESPTSIMKCGKGDALSSTGDLHLQSQSTAAEEPLRQADIHHHHHHHHHHQRVSGEHSSRSSEVKVGTKSISVSGYQWESGSENSTIGPSTATWSIATDPTWRVGSENTNLGWSGMDRGNVNIGWGVGQSAVQENRSTSSYTPTVSPSFGGSQARYGSDRPSVPRDRGFHGHGRESAVARGRTAWNRQTSFGVGNGGSHRPLPKGQRVCKFYESGRCKKGASCDYFHP 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00887 745 MobiDBLite consensus disorder prediction 306 352 - -
Adu05g00887 745 CDD GYF 132 187 IPR003169 GO:0005515
Adu05g00887 745 SUPERFAMILY GYF domain 130 185 IPR035445 -
Adu05g00887 745 MobiDBLite consensus disorder prediction 1 15 - -
Adu05g00887 745 MobiDBLite consensus disorder prediction 505 587 - -
Adu05g00887 745 MobiDBLite consensus disorder prediction 652 690 - -
Adu05g00887 745 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 1 745 - -
Adu05g00887 745 MobiDBLite consensus disorder prediction 557 571 - -
Adu05g00887 745 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 1 745 - -
Adu05g00887 745 MobiDBLite consensus disorder prediction 652 672 - -
Adu05g00887 745 MobiDBLite consensus disorder prediction 23 52 - -
Adu05g00887 745 ProSiteProfiles Zinc finger C3H1-type profile. 720 745 IPR000571 GO:0046872
Adu05g00887 745 ProSiteProfiles GYF domain profile. 132 186 IPR003169 GO:0005515
Adu05g00887 745 SMART gyf_5 133 188 IPR003169 GO:0005515
Adu05g00887 745 Pfam GYF domain 135 175 IPR003169 GO:0005515
Adu05g00887 745 MobiDBLite consensus disorder prediction 1 54 - -
Adu05g00887 745 MobiDBLite consensus disorder prediction 536 550 - -
Adu05g00887 745 MobiDBLite consensus disorder prediction 211 352 - -
Adu05g00887 745 MobiDBLite consensus disorder prediction 221 235 - -
Adu05g00887 745 MobiDBLite consensus disorder prediction 236 264 - -
Adu05g00887 745 SUPERFAMILY CCCH zinc finger 720 744 IPR036855 GO:0046872
Adu05g00887 745 Gene3D - 134 190 IPR035445 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00887 Adu-Chr5 11217507 11220149 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu05g00887 GYF 5.1e-12 CL0673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00887 - - gmx:100801151 906.746