Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00882 ATGGAGTGCATGGTGGAGGGAGCGTTGAAGACGAGTTTTAGAAAAGAGATGGGGATGGGTATGAAATATACCACATCCCCGCAGAGGTCCTTCATGGAAGAACTTCAAAATGGCGCCCCTTCCGACGACTTCTTCGTTGACCAACTCCTTGACTTCTCCCAAGTAGACCAACAAGAAGAGCAACAAGAAGAAGAACAAGAGCATAAGAAAGTTGGAGAAGACTCTGCTTGCGTGTCACTCTCGCCGCAACAGACCAACGACGTTGAAGAGACCTTTCCCTCTCTCCCCACCACAGACCTCAACCTTCCGGATGATGTGGCAGACTTGGAGTGGCTCTCTCATTTCGTCGAGGATTCCTTCTCTCAATTCTCTCCTCCCATCGTCCCCGCCGCCGTACCAACCTCAACCCCACCTGCTCCGCCTCAACCTTGTTTCAACACCCCCGTTCCTGCCAAGGCGCGTAGCAAGCGAACCCGAACCGGTGTCAGGGTTTGGCCACTCGCCTCACCTTCCTTCGCCACCACTGACTCCTCCTCAACCACTGCCACCGCTACCTCCTCCACCTCTTCTTCCCCTTCCAGCCCCTTGCTAATTTACGCCACAAACCTGTCCCAGACCATGGACCAGGTTAGCTCCGACGCTCCGCCGAAGAAGCCCAAGAAGAAGGCCTCTCCGGAAGGCGGATTTCCGGCACAGGCACCGCGCCGCTGCAGCCATTGCGGCGTCCAGAAGACCCCGCAGTGGAGAACGGGACCCCTCGGGGCGAAAACGCTCTGCAACGCGTGCGGGGTTCGGTACAAATCGGGTCGGCTCTTACCCGAATATAGACCCGCTTGCAGCCCAACGTTCTCCAGCGAGTTGCACTCCAACCACCACCGGAAAGTTCTGGAGATGCGGCGGAAGAAGGAGACTATAGGTGGTGGGGTTGATACCTCCGGTTTGGCCCCTCCGGTTGTTCCCAGTTTTTGA 969 0.5676 MECMVEGALKTSFRKEMGMGMKYTTSPQRSFMEELQNGAPSDDFFVDQLLDFSQVDQQEEQQEEEQEHKKVGEDSACVSLSPQQTNDVEETFPSLPTTDLNLPDDVADLEWLSHFVEDSFSQFSPPIVPAAVPTSTPPAPPQPCFNTPVPAKARSKRTRTGVRVWPLASPSFATTDSSSTTATATSSTSSSPSSPLLIYATNLSQTMDQVSSDAPPKKPKKKASPEGGFPAQAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETIGGGVDTSGLAPPVVPSF 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00882 322 SMART GATA_3 231 285 IPR000679 GO:0006355|GO:0043565
Adu05g00882 322 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
Adu05g00882 322 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 231 293 - -
Adu05g00882 322 PIRSF Txn_fac_GATA_plant 17 319 IPR016679 GO:0003677|GO:0005634|GO:0045893
Adu05g00882 322 MobiDBLite consensus disorder prediction 170 212 - -
Adu05g00882 322 Gene3D - 230 304 IPR013088 GO:0006355|GO:0008270
Adu05g00882 322 PANTHER GATA TRANSCRIPTION FACTOR 1 306 - -
Adu05g00882 322 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Adu05g00882 322 MobiDBLite consensus disorder prediction 131 147 - -
Adu05g00882 322 Pfam GATA zinc finger 237 271 IPR000679 GO:0006355|GO:0043565
Adu05g00882 322 MobiDBLite consensus disorder prediction 77 98 - -
Adu05g00882 322 MobiDBLite consensus disorder prediction 131 237 - -
Adu05g00882 322 MobiDBLite consensus disorder prediction 55 99 - -
Adu05g00882 322 PANTHER GATA TRANSCRIPTION FACTOR 1 306 - -
Adu05g00882 322 CDD ZnF_GATA 236 284 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00882 Adu-Chr5 10992520 10994017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00882 4 322 C2C2-Gata Transcription Factor Family AT5G66320 44.932 5.70e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Adu05g00882 GATA 4.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00882 - - aprc:113869559 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00882 05 10992520 10994017 Adu05g00882 05 10992520 10994017 ECH