Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00840 ATGGCAGTGATCCAAGCCAACAACAACAATGATGATGAAATTTTGAAAATAAAGAAGAGGGTAAAACTACAACTGATAGATGATATAAGTTCAACGAAAGCTACATTTAAGAAGAGATGTGCCGGGTTGTTGAAAAAGTTGGAGCAGATCGCCATCCTTTGTGACATTCAGGCTTGTATTGCCATCTTTTGTAGGGATGATGAGTTGGACCGTTTTCTCACCTATGTTGACGACAAGTTGAAGGCTAAGAATTTAGAAGATGTTGTTCCTAATGATGAACCAGATGATGATTTTTTTGGAGGATTGTTCTTTGAAGATGAGAGTTGCAGGTCGGTTCTGTTTCCTGCTGGTGATGAGAACGTGTTGGTGGTTCCACCGGCTGAAGCTAATAATGAAGAATTAGTTGGGTTTGGAGATTTCGATGATTTAGTGGATTTTGGTGATCTTGACAATTTTGGTGACCTCACTGTTGGAACTGATGATGATTTCTATGAGTTATTATTGCCTAATCAGGGCAATGCCGCCGGAAATACTAGTAATGATAATCATAAAGGGCTGTGGTAG 564 0.3954 MAVIQANNNNDDEILKIKKRVKLQLIDDISSTKATFKKRCAGLLKKLEQIAILCDIQACIAIFCRDDELDRFLTYVDDKLKAKNLEDVVPNDEPDDDFFGGLFFEDESCRSVLFPAGDENVLVVPPAEANNEELVGFGDFDDLVDFGDLDNFGDLTVGTDDDFYELLLPNQGNAAGNTSNDNHKGLW 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00840 187 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Adu05g00840 187 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Adu05g00840 187 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Adu05g00840 187 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Adu05g00840 187 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Adu05g00840 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 72 IPR002100 GO:0003677|GO:0046983
Adu05g00840 187 Gene3D - 28 92 IPR036879 GO:0003677|GO:0046983
Adu05g00840 187 SUPERFAMILY SRF-like 18 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00840 Adu-Chr5 10246298 10248863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00840 17 64 Type I MADS-box Gene Family AT1G31640 45.833 2.71e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu05g00840 SRF-TF 4.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00840 - - adu:107487931 131.724