Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00839 ATGGATAACAACGGTCTTAACCTGTTTTCCGCTCCCCAGGAAAGGAGGGTGTCATTTGCAGAACTAGCAAGACAGTATGAGATGGCAGCCAACAACAACAATGATGATGAACTCCCAAAAATGAAGAGGAGGGTGAAACTACAACTTATAGATGATATGAATTCAAGGAAAGCTACATTCAAAAAGAGACGTGCTGGATTGTTGAAGAAATTGGAGCAGCTCGCCATCCTTTGTGACATTCAGGCTTGTATTGCCATCTTTGGTCCAGGGGACAAGAGTCCTACAGTATGGCCGTCAGTGGAGGAGGCTAAAGAGATCGTGGAGAGGTTTGAGGAGATTCCGGAGCCAGAGCGGTCGAGCAGAATGGTAACTCATCAGGAGTACAGGCAACAGAAGGTGATTTGGATGGAGAAGCAACTTGAGAAGCTCAAGAAACTTAACGATCAGAAAGAGATGGCCATCTTCCTGCATAAAATCTATAACGAACATAGGCCTATAACTGATTTTAGCGATGATGAGTTGGACCGTTTTGTCACCTATGTTGACGACAAGTTGAAGGCGGTTAGAAACAACATAATAAGAACCCGCCGCTCTGAAGTGTCAATTTCGTCGCAGCCACCACCGGCGCCTCCATCAGCAGTGGCGGTGCAGCCACTGATTATTTCTGGTGAAGTTGATAGCAGTGTGCAAGATGAATTGTTATTTAATGCAGAGCAACAACAGAAGAATTTAGAAGATGTTGTTGTTCCTAATGATGAACCGGATGATGATTTTTTTGGAGGATTGTTCTTTGAAGATAAGAGTAACGGGTCGGTTCTGTTTCCTGTTGGTAATGAGAACGTGTTGGTGGTTCCACCGGCTGAAGCTAATGAAGAATTATTTGGGTTTAGAGATTTCGCTGATTCAGTGGATTTTGGTGATCTTGACAATTTTGGTGACCTCACTGTTGGAACTGATGATGATGACGATGATGATTTCTTAATTGATGAGTTATTATTGCCTAATCAGGGCAATGCCGCCGGAACTACTAGTAATGATAATCATAAAGGGCCGTGGTAG 1059 0.4363 MDNNGLNLFSAPQERRVSFAELARQYEMAANNNNDDELPKMKRRVKLQLIDDMNSRKATFKKRRAGLLKKLEQLAILCDIQACIAIFGPGDKSPTVWPSVEEAKEIVERFEEIPEPERSSRMVTHQEYRQQKVIWMEKQLEKLKKLNDQKEMAIFLHKIYNEHRPITDFSDDELDRFVTYVDDKLKAVRNNIIRTRRSEVSISSQPPPAPPSAVAVQPLIISGEVDSSVQDELLFNAEQQQKNLEDVVVPNDEPDDDFFGGLFFEDKSNGSVLFPVGNENVLVVPPAEANEELFGFRDFADSVDFGDLDNFGDLTVGTDDDDDDDFLIDELLLPNQGNAAGTTSNDNHKGPW 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00839 352 SUPERFAMILY SRF-like 42 132 IPR036879 GO:0003677|GO:0046983
Adu05g00839 352 CDD MADS_SRF_like 41 123 IPR033897 GO:0000981|GO:0000987|GO:0045944
Adu05g00839 352 Gene3D - 52 134 IPR036879 GO:0003677|GO:0046983
Adu05g00839 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 50 92 IPR002100 GO:0003677|GO:0046983
Adu05g00839 352 ProSiteProfiles MADS-box domain profile. 40 92 IPR002100 GO:0003677|GO:0046983
Adu05g00839 352 SMART madsneu2 40 99 IPR002100 GO:0003677|GO:0046983
Adu05g00839 352 PRINTS MADS domain signature 42 62 IPR002100 GO:0003677|GO:0046983
Adu05g00839 352 PRINTS MADS domain signature 62 77 IPR002100 GO:0003677|GO:0046983
Adu05g00839 352 PRINTS MADS domain signature 77 98 IPR002100 GO:0003677|GO:0046983
Adu05g00839 352 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 42 240 - -
Adu05g00839 352 PANTHER SERUM RESPONSE FACTOR HOMOLOG 42 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00839 Adu-Chr5 10240591 10241994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00839 41 223 Type I MADS-box Gene Family AT1G31630 30.688 2.33e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu05g00839 SRF-TF 8.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00839 - - adu:107487931 659.062