Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00835 ATGAGCAACACAACAAGTGGGGTGTACGTTGGATCCAGCAACATCACCGGCTATGTCTATGGCATAGGAATCTACATTGGGATCGTCTTTTTTATCACCACCATCACCCTAACCTTTTACTTCTGCAACAGACACCATCAGCAACGACTCCCTCCTGCAGCTCCTAATAGGAGACAGAATGCGCTTGAAGTTGGAATAGATGAAGAATCACTTGTGAGTTATCCAAAGTTGTTGTACTCTGAAGCAAAAAAACTGAAGAAGAATGATTCAACTTGTGCATGTTGTTCTATATGCCTTGCAGATTACAAGGGTAGTGATATGCTTAGGGTGTTACCTGATTGTGGCCACCAATTCCATATCAAGTGCATAGATCCATGGCTGAGGCTTCACCCTACTTGTCCACTCTGCAGAACCTCTCCCATTCCGACGCCTCTTTCAACTCCCTTGCCTCAGAGATTTATCCCTTGCCTCATTCCGCCGAGGTGA 486 0.4547 MSNTTSGVYVGSSNITGYVYGIGIYIGIVFFITTITLTFYFCNRHHQQRLPPAAPNRRQNALEVGIDEESLVSYPKLLYSEAKKLKKNDSTCACCSICLADYKGSDMLRVLPDCGHQFHIKCIDPWLRLHPTCPLCRTSPIPTPLSTPLPQRFIPCLIPPR 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00835 161 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 5 151 - -
Adu05g00835 161 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 151 IPR045899 -
Adu05g00835 161 Pfam Ring finger domain 95 137 IPR001841 -
Adu05g00835 161 CDD RING-H2_PA-TM-RING 94 137 - -
Adu05g00835 161 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Adu05g00835 161 SUPERFAMILY RING/U-box 94 143 - -
Adu05g00835 161 SMART ring_2 95 136 IPR001841 -
Adu05g00835 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 141 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00835 Adu-Chr5 10196998 10197483 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00835 6 149 C3H Transcription Factor Family AT5G06490 45.977 5.43e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00835 - - gmx:100811799 179.874