Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00796 ATGGAAGAAGATCCTGTTGAGTCTCCCACTTCCGTCCTTGAAGACGAGGATGCTTGTGCTGTGAAAGTTGAAGTTGAGTCTGATGAAGTGCAGTGCCAGGAGGCACCTGAGCTTACTGATACTCAGTTTAACAAATTGGATGAGCTTTTAACTCAAACAAAGCTCTATTCCGAGTTTCTGCTGGAGAAAATGGACGACATCACACTTAATGGGGGCGAGCAAGAGAATGAGCCCGAAGAGAAGAAAGTGCGTGGCCGGGCTTCTAAAAGGAAAGCAGCTTCACAGTGCAATACTACGAGGGCCAAAAGGGCAGTTGCTGCTATGCTTGCAAGATCAAAAGAAAGTGTTAAGATAGAAGATATTAACATGACTGAGGAGGAAAGAACTGAGAAAGAACAGAAGGAGCTTATGCCTTTACTCACGGGCGGAAAATTGAAGTCTTATCAGCTTAAAGGTGTAAAGTGGTTGATTTCACTCTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACCATTCAAACAATTGGGTTTCTTTCACATCTAATAGGGAAAGGTCTCCATGGGCCATACATGATAATTGCTCCTCTAAGCACCCTCTCAAATTGGAAAAATGAGTTTTCTAGGTTTGCACCATCAGTTCCTGCAATTATCTACCATGGCAACAGGCAAGAGAGAGATGTAATCCGACGGAAACATATGCCTGTAACCATTGGCCCCAAATTCCCCATATTAATAACTTCATATGAGGTTGCTTTAAATGATGCTAAAAAACATTTAAGGGTTTACCCTTGGAAGTATCTTGTAGTTGATGAGGGACACAGACTCAAAAATTCAAAGTGTAAATTAGTGAAGGAGTTGAAATGGATTAATGCACAGAACAAGCTACTTTTATCAGGGACTCCTCTTCAGAATGACTTGGCAGAGCTATGGTCCTTGTTGAACTTCATTTTACCGGATATTTTTGCTTCGCTTGAAGAATTTAAGTCATGGTTTAATCTATCAGGAAAGTGCAACAATGGAGCAACCAAGGAAGAATTAGAAGAAACAAGAAGAGGCCAAGTGGTGACTAAGCTTCATGCCATACTTCGACCCTTTCTCCTGCGTAGAATGAAGTCTGATGTTGAGATTTCATTGCCAAGAAAGAAGGAGATCATTATCTATGCAAATATGACTGAGCATCAGAAGAAATTGCAGGATCATTTAGTCAACAAGACGTTGGAGAACTATTTTGCGGACATGAAGTCAATGGGGCGTGGAATAAAGACGCTTAATAATTTGGTTATTCAACTTAGGAAAGTCTGTAACCATCCTGACCTCTTAGAGTCTGCCTTTGATGGTTCATGGCTTTATCCTCCTGTGAATGAGATAGTTGAACAATGTGGAAAATTTCGTTTGCTTGAACGGCTGTTGGAAAGGTTATTTGCAAGGAAACACAAAGTTTTGATATTCAGTCAGTGGACCAAAGTGTTGGACATACTGGATTACTATTTGAGTGAGAAGGGCTTTGAAGTTTGTAGGATTGATGGTAGTGTGAAATTGGATGAAAGGAAACGACAGATCCATGAATTCAATGATGAAAATAGCAATTGCAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGACTAGGAATTAACCTTACTGCAGCTGACACATGCATTCTTTATGACAGTGATTGGAATCCTCAGGTAGACTTGCAGGCCATGGATAGGTGTCACAGAATTGGTCAAACAAAACCAGTTCATGTTTACAGGCTCTCGACTGCTCAATCTGTAGAGGGTCGCATGCTGAAAAGAGCTTTTAGCAAGTTGAAACTTGAACATGTGGTGATTGCAAAAGGACATTTTCATCAAGATCGCACAATGCTCAAAGTGGATGAAATGGAGGAACAAGATATTATGGCATTGCTTCGGGACGAGGATGCAGCTGAAGATAAATTGATACAAACAGATATTAGTGATGAGGATTTGGATAAGCTGTTGGATCGCAGTGATCTTATTGCTCAAGATCCAAATGATGACGACAAGGAACTCAAAGTTCCATGCGATGCATTTCCTCTTAAAGGACCTGGGTGGGAGGTTGTAATTCCGACGGCAACTGGGGGCATGCTTTCTACTCTTAACAGTTAA 2145 0.4117 MEEDPVESPTSVLEDEDACAVKVEVESDEVQCQEAPELTDTQFNKLDELLTQTKLYSEFLLEKMDDITLNGGEQENEPEEKKVRGRASKRKAASQCNTTRAKRAVAAMLARSKESVKIEDINMTEEERTEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLIGKGLHGPYMIIAPLSTLSNWKNEFSRFAPSVPAIIYHGNRQERDVIRRKHMPVTIGPKFPILITSYEVALNDAKKHLRVYPWKYLVVDEGHRLKNSKCKLVKELKWINAQNKLLLSGTPLQNDLAELWSLLNFILPDIFASLEEFKSWFNLSGKCNNGATKEELEETRRGQVVTKLHAILRPFLLRRMKSDVEISLPRKKEIIIYANMTEHQKKLQDHLVNKTLENYFADMKSMGRGIKTLNNLVIQLRKVCNHPDLLESAFDGSWLYPPVNEIVEQCGKFRLLERLLERLFARKHKVLIFSQWTKVLDILDYYLSEKGFEVCRIDGSVKLDERKRQIHEFNDENSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQVDLQAMDRCHRIGQTKPVHVYRLSTAQSVEGRMLKRAFSKLKLEHVVIAKGHFHQDRTMLKVDEMEEQDIMALLRDEDAAEDKLIQTDISDEDLDKLLDRSDLIAQDPNDDDKELKVPCDAFPLKGPGWEVVIPTATGGMLSTLNS 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00796 714 Gene3D - 381 684 IPR027417 -
Adu05g00796 714 SMART helicmild6 497 581 IPR001650 -
Adu05g00796 714 Pfam Helicase conserved C-terminal domain 471 581 IPR001650 -
Adu05g00796 714 PANTHER BNAC07G16550D PROTEIN 30 713 - -
Adu05g00796 714 Pfam SNF2-related domain 148 445 IPR000330 GO:0005524|GO:0140658
Adu05g00796 714 SMART ultradead3 141 336 IPR014001 -
Adu05g00796 714 Gene3D - 110 374 IPR038718 -
Adu05g00796 714 MobiDBLite consensus disorder prediction 70 95 - -
Adu05g00796 714 CDD SF2_C_SNF 457 591 - -
Adu05g00796 714 PANTHER SNF2/RAD54 HELICASE FAMILY 30 713 - -
Adu05g00796 714 MobiDBLite consensus disorder prediction 70 86 - -
Adu05g00796 714 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 325 IPR014001 -
Adu05g00796 714 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 471 634 IPR001650 -
Adu05g00796 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 375 IPR027417 -
Adu05g00796 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 671 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00796 Adu-Chr5 9577756 9582104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00796 113 602 RAD5 or RAD16-like Gene Family AT1G02670 27.191 9.43e-42 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu05g00796 SNF2_N 9.3e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00796 K19001 - gmx:100777687 1127.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00796 05 9577756 9582104 Adu05g00796 05 9577756 9582104 ECH