Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00740 ATGGGTTGGTTATCCAAGTTGCTTAAGGGCTCTAACCATAGAACTTCAAGAGGGCAATACCATGGCAAATATGGAGAGGACAGAATTTGGGATAACCATCATGCTTCAGTGGATGATTTGAATGATGTTGAGAAAGAGGACATTGATTGTGCAATTGCACTCTCTCTGTCAGAGCAGGATCAGAAAGGAAAAAGTGTTGTTGAGGACGACTCTCAATCCGAAGAAGATGAACAACTTTGTAAAGTTGATGATGAGGAAGATGAGCATACTTGTACAGTTCAACAACAAGAAGAAGAACATCTTGATAAGGTTCGGCCGGATGAAGATGATGAACATCTTTCTAAAGATCAACTTGAGGAAGATGAGCAACTTGCCAGGGCAATCCAAGAAAGTTTGAACATTGATTCTCCTCCTAGTCCTAGATATGAGAATGATTCTATTTTCCAACCTTTATCAAACCTCTTTCCACCAGGATACAGAATCTGTGCTGGATGCAAAGCTGAAATTGGGCATGGAAGATTTTTAAGTTGCATGGGAGCTGTTTGGCATCCACAATGTTTTCGCTGCAATGCTTGCAATCTTCCAATAACAGATTATGAGTTTTCCATGTCTAGCAATTGCCCCTACCATAAATCTTGCTACAGGGAGCAACACCACCCAAGATGTGATGTTTGCAATAACTTTATTCCAACTAATTCAGCTGGTCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGTCCATCGCATGATCGAGATGGAACTCCTCGGTGTTGTAGCTGCGAAAGAATGGAGCCAAGGGATGCAAAGTATCTTTTGCTTGATGATGGTAGAAAGCTATGTTTAGAGTGTCTGGACTCATCAATCATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAGTTCTATGAAGGTTTAAACATGAAAGTTGAGCAGCAAGTTCCTATGCTTCTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGCAAGTGGTCATCACCACTTGCCTGAAACTAGAGGACTGTGTTTGTCAGAAGAGCAAACTGTCACCTCGATTTCAAGGAGACCAAAGATAGGAGCAGGCCATCGAGTCGTGGATATGGTAACAGAGCCTTTTAGGCTGATCCGTCGATGTGAAGTGACAGCCATTCTTGTGTTGTATGGCCTTCCTAGGTTGTTGACAGGATCAATCCTGGCTCATGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTATCCCAATCTGAGTCCAGAGGTTGAAGAAGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAAATATATTCTGCATCCGGTAGTGATTGTTCATCTTCGTCCTCATCATCGCCTTCCTCCTCCTCCTCCTCCTCATCCTCCTCCTCCGCGTCATCAAAGAAAGGCAAACGGTCTGATTTCGAGAAGAAGCTCGGCGAGTTTTTTAAGCACCAGATTGAGGCTGATACATCATCAGCTTATGGAAAAGGATTCAGGTTGGGAAACGAGGCAGTGCTCAAGTATGGTCTCAGAAGTACCCTTGATCATATCCAAATGACTGGAAGTTTTCCATATTGA 1611 0.4302 MGWLSKLLKGSNHRTSRGQYHGKYGEDRIWDNHHASVDDLNDVEKEDIDCAIALSLSEQDQKGKSVVEDDSQSEEDEQLCKVDDEEDEHTCTVQQQEEEHLDKVRPDEDDEHLSKDQLEEDEQLARAIQESLNIDSPPSPRYENDSIFQPLSNLFPPGYRICAGCKAEIGHGRFLSCMGAVWHPQCFRCNACNLPITDYEFSMSSNCPYHKSCYREQHHPRCDVCNNFIPTNSAGLIEYRAHPFWLQKYCPSHDRDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKVEQQVPMLLVERQALNEAMEGEKNASGHHHLPETRGLCLSEEQTVTSISRRPKIGAGHRVVDMVTEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYSASGSDCSSSSSSSPSSSSSSSSSSSASSKKGKRSDFEKKLGEFFKHQIEADTSSAYGKGFRLGNEAVLKYGLRSTLDHIQMTGSFPY 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00740 536 SMART uim 119 138 IPR003903 -
Adu05g00740 536 SMART uim 43 62 IPR003903 -
Adu05g00740 536 Pfam Protein DA1 311 531 IPR022087 -
Adu05g00740 536 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 243 - -
Adu05g00740 536 ProSiteProfiles LIM domain profile. 160 220 IPR001781 -
Adu05g00740 536 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 536 - -
Adu05g00740 536 MobiDBLite consensus disorder prediction 84 118 - -
Adu05g00740 536 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 187 - -
Adu05g00740 536 CDD LIM_DA1 162 214 - -
Adu05g00740 536 MobiDBLite consensus disorder prediction 1 28 - -
Adu05g00740 536 MobiDBLite consensus disorder prediction 458 482 - -
Adu05g00740 536 Gene3D Cysteine Rich Protein 156 220 - -
Adu05g00740 536 MobiDBLite consensus disorder prediction 58 118 - -
Adu05g00740 536 SMART lim_4 161 213 IPR001781 -
Adu05g00740 536 PANTHER PROTEIN DA1-RELATED 2 1 536 IPR045218 -
Adu05g00740 536 Pfam LIM domain 162 217 IPR001781 -
Adu05g00740 536 ProSitePatterns LIM zinc-binding domain signature. 162 196 IPR001781 -
Adu05g00740 536 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 119 138 IPR003903 -
Adu05g00740 536 MobiDBLite consensus disorder prediction 458 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00740 Adu-Chr5 8773281 8776268 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Adu05g00740 DA1-like 1.1e-103 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00740 - - aip:107642826 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00740 05 8773281 8776268 Adu05g00740 05 8773281 8776268 ECH