LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu05g00706	ATGAATCGAACGCCGGCAGCGGCGGCGGGAGCTGGCGGAGGAGGGATGGAGTTGCCAATCATACACGAAAGTGATCGCTACGATTTCGTCCGTGACATAGGCTCCGGGAATTTCGGTGTGGCAAGGCTCATGAGGGACAAGCTCACCAAGGAGCTTGTTGCTGTTAAGTACATCGAACGCGGTGATAAGATTGATGAAAATGTTAAGAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATCATCAGGTTTAAAGAGGTCATTTTGACACCTACTCATTTGGCAATCGTAATGGAATATGCATCTGGAGGAGAATTGTTTGAGCGAATCTGCAATGCAGGGCGTTTTACTGAAGACGAGGCTCGATTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGCCATGCAATGCAAGTATGTCACCGGGACTTGAAGTTGGAGAACACTTTGTTGGATGGAACTTCAGCTCTTCATTTGAAAATATGTGATTTTGGGTACTCCAAGTCTTCAGTGCTTCATTCACAACCAAAGTCAACAGTGGGGACTCCAGCATATATTGCTCCAGAAGTGTTGCTAAAGCAAGAGTATGATGGCAAGGTCGCGGATGTTTGGTCATGTGGAGTAACCTTATATGTGATGCTAGTGGGATCATATCCTTTTGAAGATCCTAATGAACCTAAAGACTTCAGGAAGACAATTCAGAGGGTCCTCAGCGTCCAGTACTCTATCCCAGACTTTGTTCAAGTATCTCCAGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCTGAGAGGATCACCATTCCTGAAATCTTGAAAAATGAATGGTTTCTGAAGAATCTTCCGGCAGAGTTGATTGATGAAAAAATTATGGGTAACCAATTTGAAGAGCCAGATCAACCCATGCAGAGCATTGATGAGATCATGCAGATAATTTCAGAAGCTACAATACCACCGGTTAGGGCACATACGTTAGACCATTTTATGATGGATAACATCGATGTGGATGATGACATGGATGACTTGGACTCTGACTTCGAGCTTGATGTAGATAGCAGTGGGGAGATAGTATATGCTATATAA	1101	0.4378	MNRTPAAAAGAGGGGMELPIIHESDRYDFVRDIGSGNFGVARLMRDKLTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFTEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGTSALHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKVADVWSCGVTLYVMLVGSYPFEDPNEPKDFRKTIQRVLSVQYSIPDFVQVSPECRHLISRIFVFDPAERITIPEILKNEWFLKNLPAELIDEKIMGNQFEEPDQPMQSIDEIMQIISEATIPPVRAHTLDHFMMDNIDVDDDMDDLDSDFELDVDSSGEIVYAI	366

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Adu05g00706	366	ProSitePatterns	Protein kinases ATP-binding region signature.	33	56	IPR017441	GO:0005524
Adu05g00706	366	SMART	serkin_6	27	283	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Adu05g00706	366	Pfam	Protein kinase domain	27	283	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Adu05g00706	366	Gene3D	Transferase(Phosphotransferase) domain 1	103	290	-	-
Adu05g00706	366	PANTHER	SERINE/THREONINE KINASE	18	360	-	-
Adu05g00706	366	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	142	154	IPR008271	GO:0004672\|GO:0006468
Adu05g00706	366	ProSiteProfiles	Protein kinase domain profile.	27	283	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Adu05g00706	366	Gene3D	Phosphorylase Kinase; domain 1	7	102	-	-
Adu05g00706	366	SUPERFAMILY	Protein kinase-like (PK-like)	21	323	IPR011009	-
Adu05g00706	366	PANTHER	SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE	18	360	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu05g00706	Adu-Chr5	8361683	8366637	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu05g00706	26	294	CBL-interacting serine-threonine protein kinases	AT5G25110	44.366	6.71e-69	222

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Adu05g00706		Pkinase	3.7e-71	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu05g00706	K14498		-	gmx:100783967	616.69

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu01g00018	01	402043	407811	Adu05g00706	05	8361683	8366637	PCT

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