Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00661 ATGCTCCCAATTAACAATAATAACGCTGGTGCTGAAATAATTCACATCAGTGACGAAGAACCAGATCTGGAATCATCGTTGTTAGAAGTCAACATTAATTCTGCCCCTTCAATTTTATCAACAACGGAACAAACCAATCAACCTGCCTCAAATCTTTTAACATTACAAAGAAATTTGGGAATCAGCACCGCCAACAACAACCACCAACAAGATGGTGTCTCACTCGATTTATCCTTACACCAGTTTGACGGTGATGGTGGTGGCAGCTCTTCTACTATTGATGTCACCGATGGCGGCCCTGGTGGTGGTGGTGGAGGTGGAGATGGTCTCTTGAGGAGCGTTCTCAACAATACTTCTACTAGGCACATCATGCCTATCAAAAGAACTGCACCTGGTTATGCTCGCCGAGAGTTTACGGTGGGTGAGAGCTCAAGTGCCGGTGGTGCTGGTGGTGGATCTGTTGCTCAACCTATGGCAGCCCCCAAGCGCCGCCCCACCGCTAATGAAAATGCGGCGCTGCGCGTTTCATCATCATCTAATACCTGCACTTGTACCCCTTCTCCCACTTGCGCTCTCCATGCTTCCGCCAATAATAATCTTTCTTCATCTTCCAGGGAACAACCCCATGAAACTGCTAACAACAACAACAACCCCCAAAATGTTGTTTGTGTTCCTTCCAGTTTGTCGCCAATTTCTGAGATGCAACGAGCTCTTCAGTCTGATAGCTTTCAAGTCCTTCAACCTACTACTACTACTCCTCCTCCTCCTCCTAACAACAACAACAACAACAACGCAACACTTGGTATTCTGCAACTTGATGATGGTTCCTTTATTTACCCGCAACATGTTTTTGATAGTAGCCACCACCACCAACTCCACCATGGCCATCAGCACGCGCCAATTAATTCGCTTTACCACCATGGCCATCAACGTTATTTCTTCTCTGCTGACACTTCTCCATTCCGCCCAGCCTCAATCAATTACATGGAAAATCTTCCTCATCATCAGTACGCCGGTTCTTCGTCTTCGTCTCCTTCCCCTCTTCCTTGGAGCACCGTGATTAGGCCAAGGGCTATTCCCTCTGTGTCTCTCCCTCACGGAGTTGGAGGAAGTAATACAGAATCTGACACCGGAAACAACTATCCTTCTGGAAGGGGAATAATCACTGAGACTCACAATCGTGGAAACTCATCATCATCAACACAGCTAGTGGAAAGCCTTGTACAAAACGCTGGTACCCCTTCTGCATTTCAGCACCTGTCGGACGCTGCTCTTGCATGGATTGGAAGGCTGAACTCTCATGACGAGACCTTGACGAGAATGTCATCATCTTCTACCACTGATAATACTCATCACAGGCCATTACGAGCTTCTGCTATTGCTGAGACCTATAATTTGCCTACTTATTTTGCTGATGATTCAAGAAGGCTTAGAAGAGAGATCCGCAGTGCCATTCAACATCTGCCTAATGGAGACTCCGTTCGACTCGAGGAGCTTTTAATCATTGAGTACTCCATTTACAACTTGCTTGCCAGCATTGAGGAACTGGAGGATGCGAATTTGCCGCAATATGAGCCTCTGGAAGACGGGCAGCGAGTGATGAACCCTTTAGGACTGACGGAAACTGAGGTTGCAGCATGTATTGGACGGGAAATTTTCCAAACTGTTGGTGAGCAGCCTCAGAACATTGATGCATGCGGCATATGTCTGGAGGATTACGTTCACGGTGAAGAGCTTGGGAGATTGGATTGTGCGCACAGATATCACCTTTCTTGCATCAGTCAGTGGTTGCTCATCAAGAACAGATGCCCCGTTTGCAAGAAAATGGCTCTCACCATCATAGACTTGGAGGATGACGAGTAA 1863 0.4702 MLPINNNNAGAEIIHISDEEPDLESSLLEVNINSAPSILSTTEQTNQPASNLLTLQRNLGISTANNNHQQDGVSLDLSLHQFDGDGGGSSSTIDVTDGGPGGGGGGGDGLLRSVLNNTSTRHIMPIKRTAPGYARREFTVGESSSAGGAGGGSVAQPMAAPKRRPTANENAALRVSSSSNTCTCTPSPTCALHASANNNLSSSSREQPHETANNNNNPQNVVCVPSSLSPISEMQRALQSDSFQVLQPTTTTPPPPPNNNNNNNATLGILQLDDGSFIYPQHVFDSSHHHQLHHGHQHAPINSLYHHGHQRYFFSADTSPFRPASINYMENLPHHQYAGSSSSSPSPLPWSTVIRPRAIPSVSLPHGVGGSNTESDTGNNYPSGRGIITETHNRGNSSSSTQLVESLVQNAGTPSAFQHLSDAALAWIGRLNSHDETLTRMSSSSTTDNTHHRPLRASAIAETYNLPTYFADDSRRLRREIRSAIQHLPNGDSVRLEELLIIEYSIYNLLASIEELEDANLPQYEPLEDGQRVMNPLGLTETEVAACIGREIFQTVGEQPQNIDACGICLEDYVHGEELGRLDCAHRYHLSCISQWLLIKNRCPVCKKMALTIIDLEDDE 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00661 620 ProSiteProfiles Zinc finger RING-type profile. 566 607 IPR001841 -
Adu05g00661 620 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 187 611 IPR045191 GO:0061630
Adu05g00661 620 MobiDBLite consensus disorder prediction 195 222 - -
Adu05g00661 620 MobiDBLite consensus disorder prediction 361 381 - -
Adu05g00661 620 MobiDBLite consensus disorder prediction 366 381 - -
Adu05g00661 620 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 187 611 - -
Adu05g00661 620 MobiDBLite consensus disorder prediction 79 113 - -
Adu05g00661 620 Pfam Ring finger domain 565 607 IPR001841 -
Adu05g00661 620 MobiDBLite consensus disorder prediction 246 266 - -
Adu05g00661 620 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 550 611 IPR013083 -
Adu05g00661 620 SUPERFAMILY RING/U-box 565 613 - -
Adu05g00661 620 SMART ring_2 566 606 IPR001841 -
Adu05g00661 620 MobiDBLite consensus disorder prediction 141 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00661 Adu-Chr5 7662526 7666790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00661 480 611 C3H Transcription Factor Family AT2G15530 32.867 1.57e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00661 - - aip:107640059 960.288