Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00607 ATGGAACTCTCTTCTTCCTCCTCCTTACTCTCCCCGAAACCATGTTCACCCGCGCTTTCCAGCTATTCCTTCTCCTCTTCATTCTCCCCCTTCCCAATCAAAAACCACAATTCCAGAAACCGGAATCCACAGAGCTTTCGCATTCTCGCCGTAGCCTTGGAACCGCCGCAGCAGGAACTCCCCAACACCAGCCCCCATCCTCTCCTCAAGGAGCTCGCCGAACGCAAGAAGATAACTTCTCCTAAGAAGAAAGGTCCCACAAGAAGGTTCCTCTTGAAGCCCCCATTAGACGACAACAAACTCGCTGACAGGTTCCTCAAGAGCCCACAAATGTCCCTAAAATCGTTCCCCTTGTTGAGTTCGTGCTTGCCTTCTTCGCGGCTCAACAGTGCCGACAAGGCATGGATTGAGGACTACTTGCTGGAAGCCAAGCAGGCTCTGGGGTACCCTCTCGAGCCCTCCGAGGCGCTGGGGGACGACAACCCTGCCAAACAGTTCGATGATTTGTTGTATCTGGCATTTCAGCATCCGTCCTGCGAGAGGACCAAGGCGCGCCACGTGAGGTCAGGGCATTCTAGGCTGTTCTTTATTGGGCAGTACGTGCTGCAATTGGTCATGGCAGAGTTCTGCTTGCAGAGGTATCCGATGGAGTCGCCGGGTCCGATGAGGGAGAGAGTGTTTGGTTTGATTGGGAAGAGGAACTTGCCTCGGTGGATCAAGGCTGCAAGCTTGCAGAATTTGGTTTTTCCCTATGATGATATTGATCGGATGTTGAGGAAGGATAGGGAGGGACCTGTAAAGTCAGTATTTGGAGCTTTGTTTGGTGCAATCTATCTTTGTCATGGTATTCCAGAAGTATATCGTGTTCTTTTTGAAGTATTTGGAATGGATCCAGATGCTGAAGATTGCCAACCCAAACTGCGCAGACAACTTGAAGACATAGATCATGTGTCTAACGAACTTGAAGGCAAGATAAGCTGGCAAGATATTGTCTCATATAGACCTCCTGCAGATGCTCTGGTTGCACATCCAAGGCTGTTCCGAGCTTGTGTTCCTCCAGGCATGCATAGATTCAGAGGAAATTTATGGGATTATGATAGCAGACCCAAGGTTATGAAGACACTTGGATATCCGTTAGAAATGACTGATAGTATTCCAGAAATTACAGAAGCCAGGAACATAGAGCTTGGACTTGGATTGCAGCTCTGTTTCATGCATCCATCAAAGTACAAATTTGAGCATCCTCGATTTTGCTTTGAGAGATTAGAATACATCGGCCAAAAGATACAGGATTTGGTGATGGCCGAAAGATTGTTGATGAAGCATTTAGACGCTCCAGGATTATGGCTTCAAGAGAGGCACCGACGCCTTCTTCTGAACAAGTATTGTGGTAGATATTTGAGGGAGAAACATCTTCATGGTTTTGCTATATATGCTGACGATAAACAAGACTCTTTCGAGCGCAACCGGAGGAACAGAAACCCTGCCACAGCATCTATTCAACAAGCGATTCACGGGCTTTCATATCTTGTTTATGGGAAACGCGATGTGAGACGTCTAATGTTTGAGGTTTTTGACTTTGAGCAGAGTTTGGTTCGCAAGCTTACAATAGCAGCAGGTAACTCCGACCTCAGCCCTCTTGGAAATGATTCGGAGCGCCCCGCTATGTCGAAGGCGCGCGTCTACACTGATATAAATGTTCTTCGCCCCAAAGAGTACTGGGATTATGAGTCTCTCAACGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGGAAAGTGGGAAGGGGGAAATATAGCGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTCAAGCCTGTCAAGAAAAAAAAGATTAAAAGGGAGATTAAAATACTTCAGAACCTCTGTGGAGGCCCTAATATTGTCAAACTTCTTGATATTGTCAGAGATCAACATTCGAAAACTCCTAGCTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTCAAGGCATTGGATTACTGCCACTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATTGATCATGAATTAAGAAAACTTCGCTTAATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCTTCAAGATACTTCAAGGGGCCTGAACTTCTAGTTGATTTGCAAGACTATGACTATTCATTAGATATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAGCCTTTCTTCTATGGTCATGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCGTATCTGAATAAGTATCATCTAGAGCTTGATCCTCAACTTGATGCTCTTGTTGGAAGACACAGTCGCAAACCATGGTCTAAGTTTATCAATGCAGATAATCAGCATCTTGTGTCACCAGAGGCAATTGATTTTCTTGATAAGCTCCTTCGGTATGATCACCAAGACAGGCTAACAGCCAGAGAAGCAATGGCACATCCATATTTCTCTCAAGTTAGGGCTGCAGAAAGTAGCAGAATGAGGACACAGTAA 2667 0.4488 MELSSSSSLLSPKPCSPALSSYSFSSSFSPFPIKNHNSRNRNPQSFRILAVALEPPQQELPNTSPHPLLKELAERKKITSPKKKGPTRRFLLKPPLDDNKLADRFLKSPQMSLKSFPLLSSCLPSSRLNSADKAWIEDYLLEAKQALGYPLEPSEALGDDNPAKQFDDLLYLAFQHPSCERTKARHVRSGHSRLFFIGQYVLQLVMAEFCLQRYPMESPGPMRERVFGLIGKRNLPRWIKAASLQNLVFPYDDIDRMLRKDREGPVKSVFGALFGAIYLCHGIPEVYRVLFEVFGMDPDAEDCQPKLRRQLEDIDHVSNELEGKISWQDIVSYRPPADALVAHPRLFRACVPPGMHRFRGNLWDYDSRPKVMKTLGYPLEMTDSIPEITEARNIELGLGLQLCFMHPSKYKFEHPRFCFERLEYIGQKIQDLVMAERLLMKHLDAPGLWLQERHRRLLLNKYCGRYLREKHLHGFAIYADDKQDSFERNRRNRNPATASIQQAIHGLSYLVYGKRDVRRLMFEVFDFEQSLVRKLTIAAGNSDLSPLGNDSERPAMSKARVYTDINVLRPKEYWDYESLNVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00607 888 CDD RIBOc 400 525 IPR000999 GO:0004525|GO:0006396
Adu05g00607 888 ProSiteProfiles Ribonuclease III family domain profile. 168 282 IPR000999 GO:0004525|GO:0006396
Adu05g00607 888 PANTHER RIBONUCLEASE III 11 532 IPR011907 GO:0003723|GO:0004525|GO:0006364
Adu05g00607 888 Pfam Protein kinase domain 589 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu05g00607 888 SMART riboneu5 168 305 IPR000999 GO:0004525|GO:0006396
Adu05g00607 888 Gene3D Phosphorylase Kinase; domain 1 589 665 - -
Adu05g00607 888 Gene3D Transferase(Phosphotransferase) domain 1 666 874 - -
Adu05g00607 888 MobiDBLite consensus disorder prediction 74 93 - -
Adu05g00607 888 CDD STKc_CK2_alpha 570 874 IPR045216 GO:0004674|GO:0006468
Adu05g00607 888 Gene3D Ribonuclease III domain 165 296 IPR036389 GO:0004525|GO:0006396
Adu05g00607 888 Gene3D Ribonuclease III domain 392 528 IPR036389 GO:0004525|GO:0006396
Adu05g00607 888 SUPERFAMILY Protein kinase-like (PK-like) 561 878 IPR011009 -
Adu05g00607 888 PANTHER RIBONUCLEASE III DOMAIN-CONTAINING PROTEIN RNC1, CHLOROPLASTIC 11 532 - -
Adu05g00607 888 ProSitePatterns Protein kinases ATP-binding region signature. 595 618 IPR017441 GO:0005524
Adu05g00607 888 SUPERFAMILY RNase III domain-like 167 295 IPR036389 GO:0004525|GO:0006396
Adu05g00607 888 SUPERFAMILY RNase III domain-like 400 526 IPR036389 GO:0004525|GO:0006396
Adu05g00607 888 CDD RIBOc 168 302 IPR000999 GO:0004525|GO:0006396
Adu05g00607 888 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672|GO:0006468
Adu05g00607 888 SMART serkin_6 589 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu05g00607 888 ProSiteProfiles Protein kinase domain profile. 589 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00607 Adu-Chr5 6776767 6784829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00607 587 874 Core Cell Cycle Gene Families AT1G76540 29.450 3.41e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Adu05g00607 Pkinase 9.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00607 - - lja:Lj2g3v1963040.1 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00607 05 6776767 6784829 Adu05g00607 05 6776767 6784829 ECH
Adu05g00607 05 6776767 6784829 Adu01g01079 01 17863358 17867904 PCT