Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00601 ATGAGTTGCAACGGGTGCCGAGTCCTTAGGAAGGGTTGCAGCGAGTCATGCATCTTAAGGCCATGCCTTCAGTGGATCGAAACCGCCGAGGCCCAAGGCCACGCCACCGTCTTCGTGGCCAAATTCTTTGGTCGCGCCGGCCTCATGTCCTTCATTTCCAATGTCCCTGAGCCCCAAAGACCTGCTCTTTTTCAGTCTTTACTTTTCGAAGCATGTGGACGAACGGTTAACCCGGTTAACGGTGCCGTTGGACTACTGTGGACTGGAAACTGGCACGTGTGCCAGGCCGCCGTTGAAACGGTGCTTCGAGGAGGCTCCCTCAGGCCTATGCCGGAGCTACTCGGTCTCGACGCGCCTGTTCCTGTCGCTGTTGACGCCGGCTCCGAGGGGGAAGTCACGTGCGCTGACGCGCGGAAGCTCCGAGATCCGAACCCGAGTCCGAACATAAGGTTCACGAGCTCCCGATCTGGTAAAGATAGTTCCGGCGGGAAACGGAAGCGATCGGAGGAGTTGATGATGACGACGGCGGACCTTAACCTTCGGCTGACGCCGAGTGCCGTGCATAGCGGTTGCCGGCAGGAAATTCGGCGGCCGGGAACGCCGTCGATGAATTCGGAGGAATCGGTGACGACGATGGCGTGCTTGGAGAGCGGACTCGGAGATAACTACGCTCACGGCGGAGACCGGAAAGTCCTCAACCTTTTCATCTGA 711 0.5879 MSCNGCRVLRKGCSESCILRPCLQWIETAEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGSLRPMPELLGLDAPVPVAVDAGSEGEVTCADARKLRDPNPSPNIRFTSSRSGKDSSGGKRKRSEELMMTTADLNLRLTPSAVHSGCRQEIRRPGTPSMNSEESVTTMACLESGLGDNYAHGGDRKVLNLFI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00601 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 236 - -
Adu05g00601 236 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Adu05g00601 236 MobiDBLite consensus disorder prediction 138 170 - -
Adu05g00601 236 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Adu05g00601 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00601 Adu-Chr5 6644273 6645672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00601 1 236 AS2 family AT4G37540 58.964 2.09e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Adu05g00601 LOB 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00601 - - gmx:100816189 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00601 05 6644273 6645672 Adu01g01096 01 18550908 18552332 ECH
Adu05g00601 05 6644273 6645672 Adu05g00601 05 6644273 6645672 ECH
Adu05g00601 05 6644273 6645672 Adu09g02601 09 113489991 113490739 PCT
Adu01g01096 01 18550908 18552332 Adu05g00601 05 6644273 6645672 PCT