Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00580 ATGGATACATTGTTTAGAGTAGTGAGTTTTGAAGAATACCAACAACAGCAACAAGTTGAGTTAGATCAGTCCCTCAACTCCACCACCACTACCACTACTTCCAGCAGCTCTAGATCCTCCCGACACAACTATCACCACTACCAACAACAGCAACAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTCTCCTCGTCTTCTTCCAAGCACCACTACTATCCCTATCACTCTCAATCCCATCCCCACACTTCCACTCCTCCCGCCACCATCCTCACGCCCAACGACTTCTCCCACTCCTTCGACTTCAACCTCCAATTCTCATCAAACACCAACTGGGCCACCGACATCCTCCTCGACGCCGCGCGTGCTCTTGCCGACAAGAACACCGCCCGTCTCCAGCACCTCATGTGGATGCTCAACGAGCTCAGCTCCCCTTACGGCGACACCGAACAGAAGCTCGCCGCCTACTTCCTTCAAGCGCTCTTCAGCCGCATGACGCATGCCGGTGATCGAACCTTCCGAACCTTAACCTCCGCCTCCGATAAGACCTGCTCCTTCGAATCAACCAGAAAGACGGTGCTCAAGTTCCAAGAGGTGTCTCCGTGGACGACCTTCGGACACGTGGCAGCCAATGGCGCAATCTTGGAGGCTTTGGAAGGTGAAACGAAGTTGCACATAGTTGATATCAGCAACACCTATTGCACTCAATGGCCAACGCTATTTGAGGCCTTGGCCACTCGCTCCGACGACACCCCGCACCTCAGGCTCACAACCGTCGTCGTAACAACTGCTCACGGCGGATCTGTCCCGGCGGCGCAGAGGGTCATGAAGGAGATAGGTGCCAGGATGGAAAAGTTCGCCAGGCTCATGGGAGTTCCGTTCAAGTTCAACGTCGTTCACCATTCCGGCGATCTCTCCCAGTTCGATTTCGGGGAATTGGACATCAGGGACGACGAGGCGCTGGCCGTTAACTGCGTCAACTCGTTGCACTCGATCGCCGCGGTTGGGAACCGCCGCGACGCGGTGATATCGTCGCTGAGAAGGCTTCAGCCCAGGATCGTGACGGTGGTGGAGGAAGAAGCCGATTTGGACGTTGGTTTGGAAGGATTCGAATTCGTGAAAGGGTTCCAAGAATGCTTGAGGTGGTTTAGGGTTTACTTTGAGGCGCTGGAGGAGAGTTTTCCGAGGACGAGTAACGAGAGGCTGATGCTGGAGAGGGCGGCGGGGAGGGCGATGGTGGACTTGGTGGCGTGCTCGGCGGAGGAATCGTCGGAGAGGAGGGAGACGGCGGCGAGATGGTCGCAGAGGATGCATGGATCGGGGTTCAATACGGCGTCGTTTAGCGAGGAAGTGTGCGATGACGTTAGGGCGCTGCTGAGGAGGTACAAGGAAGGGTGGTCAATGGTACAGTGCTCGGATCACGGCGGAATGATGCTGTGGTGGAAGGAGCAGGCGGTGGTGTGGGCCAGTGCATGGAGGCCCAGCTTCACGTAG 1503 0.5589 MDTLFRVVSFEEYQQQQQVELDQSLNSTTTTTTSSSSRSSRHNYHHYQQQQQDEECFNFFMDEEDLSSSSSKHHYYPYHSQSHPHTSTPPATILTPNDFSHSFDFNLQFSSNTNWATDILLDAARALADKNTARLQHLMWMLNELSSPYGDTEQKLAAYFLQALFSRMTHAGDRTFRTLTSASDKTCSFESTRKTVLKFQEVSPWTTFGHVAANGAILEALEGETKLHIVDISNTYCTQWPTLFEALATRSDDTPHLRLTTVVVTTAHGGSVPAAQRVMKEIGARMEKFARLMGVPFKFNVVHHSGDLSQFDFGELDIRDDEALAVNCVNSLHSIAAVGNRRDAVISSLRRLQPRIVTVVEEEADLDVGLEGFEFVKGFQECLRWFRVYFEALEESFPRTSNERLMLERAAGRAMVDLVACSAEESSERRETAARWSQRMHGSGFNTASFSEEVCDDVRALLRRYKEGWSMVQCSDHGGMMLWWKEQAVVWASAWRPSFT 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00580 500 Pfam GRAS domain family 118 496 IPR005202 -
Adu05g00580 500 MobiDBLite consensus disorder prediction 19 48 - -
Adu05g00580 500 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 496 IPR005202 -
Adu05g00580 500 PANTHER PROTEIN SHORT-ROOT 1 496 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Adu05g00580 500 MobiDBLite consensus disorder prediction 71 93 - -
Adu05g00580 500 ProSiteProfiles GRAS family profile. 107 496 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00580 Adu-Chr5 6340066 6342303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00580 1 498 GRAS Transcription Factor Family AT4G37650 62.268 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Adu05g00580 GRAS 1.6e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00580 - - gmx:100820459 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00580 05 6340066 6342303 Adu05g00580 05 6340066 6342303 ECH
Adu05g00580 05 6340066 6342303 Adu01g01124 01 19730125 19732239 PCT