Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00559 ATGAATCATGCCTCAACTCAAATCATGAAGACCCTCCTAGATGCTGACACCATTGTTAACTTGAACAATCAAAATAATATACTAGGTGTTCCTTCACACCCTTCTTCTTCTGCTGCTGTAGAAGCAGTTCTACCACCAAGCTTTTGCTGTTACTATGGAGTTGAAGGTGAAAATGTTGGATGGTATCCACCACTCCCTGTCTTGCCCCTTAAATCCGATGGCTCTCTCTTTGACATAGAAGCTCTCAGCAGAACAAAACAACAAGCGCCAAAACTGGAGGATTTCTTTGGTGGGCAAAGCCAAACAACGGTGACTCCTGAATGCAACAACGCCAGAGAAGCACTGCCTCTGAACTATAACATGTTTCACAATCCAAATTATCTAAATCATGTACAAGAGAATATCAACTTGCTTCATGATGTTAACCAGCAACACTCATATTATTCTTCTGCATCAAGAAACAACAACAACCATCATCAGGTGATGCTACAAGGATACAATATGGCTAAGGAGGAAGTGCCTGGTATCCACCATGCAATGGAGGCAAAACTGGTTGTTCCTTTGGACGATAATAGAGGTGAATCGCTGTCCATTGGATCGGTGGCGTTCGGGGATTTACAGTCACTGAGGTTGTCCATGAGTCCAAGCTCCCAATCAAGTTGTGTCACAACCTCACAACAAGCATCACATGCTGTCATGAGCACTTCAAAGAAGAGGGTGCATGATGAAATGGTGGAGCAGAACCAGAAGCAAATTGCTCATAGAAAATCCATTGATACCTTTGGTCAGAGAACATCTCAATATAGAGGTGTTACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGTTGCAAGAAAGAGGGTCAGAGTAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCAGCGAGAGCTTATGATTTGGCTGCACTCAAGTATTGGGGACCCTCCACTCATACAAACTTCCCATTGGAAAATTATCAAAATGAGCTTGTGCAAATGAAGAACATGACTAGGCAGGAATATGTTGCTCATTTACGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCAATCTACAGAGGAGTAACAAGACACCATCAGCATGGAAGGTGGCAAGCCCGAATTGGAAGAGTGGCTGGAAACAAAGATCTATATCTTGGGACATTCAGTACCCAAGAGGAAGCTGCTGAAGCATACGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCAGTAACTAACTTTGAAATAATCAGATACGATGTGGAAAAAATTATGGCAAGCAATGACCTTCTTAGCATTGAACAAGCTAGGAGAAAAAGAGAGGTCATTGTTAATAATAACCATAAACCATCTACTATTGAAGAATCGATTCTAATGCACAAGAGCTGCAAAAACCCTCAGATCATGATGATTAATCATCCACCAACAATGGCATTAGAGGAGGAATCAAGTAGTAAGACTGGAACACATATTTCAAATGAAGATAAGACAGGTTTGCCAATTCTCTATGGAAGACCTTCAACAACAGCAGCCTCTACTAGATTACTGGCTACCATTCCAACCGGTTGGGACCAACCACCATCACATCTGAGACCTAATAAGCTTTCCTTGCCTCAGATGCCAGTTTTTGCTGCATGGACAGACGCATAA 1686 0.4217 MNHASTQIMKTLLDADTIVNLNNQNNILGVPSHPSSSAAVEAVLPPSFCCYYGVEGENVGWYPPLPVLPLKSDGSLFDIEALSRTKQQAPKLEDFFGGQSQTTVTPECNNAREALPLNYNMFHNPNYLNHVQENINLLHDVNQQHSYYSSASRNNNNHHQVMLQGYNMAKEEVPGIHHAMEAKLVVPLDDNRGESLSIGSVAFGDLQSLRLSMSPSSQSSCVTTSQQASHAVMSTSKKRVHDEMVEQNQKQIAHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFPLENYQNELVQMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFEIIRYDVEKIMASNDLLSIEQARRKREVIVNNNHKPSTIEESILMHKSCKNPQIMMINHPPTMALEEESSSKTGTHISNEDKTGLPILYGRPSTTAASTRLLATIPTGWDQPPSHLRPNKLSLPQMPVFAAWTDA 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00559 561 SUPERFAMILY DNA-binding domain 368 427 IPR016177 GO:0003677
Adu05g00559 561 Gene3D AP2/ERF domain 369 429 IPR036955 GO:0003700|GO:0006355
Adu05g00559 561 Gene3D AP2/ERF domain 266 335 IPR036955 GO:0003700|GO:0006355
Adu05g00559 561 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1 45 559 - -
Adu05g00559 561 CDD AP2 266 333 IPR001471 GO:0003700|GO:0006355
Adu05g00559 561 CDD AP2 368 428 IPR001471 GO:0003700|GO:0006355
Adu05g00559 561 PRINTS Ethylene responsive element binding protein signature 268 279 IPR001471 GO:0003700|GO:0006355
Adu05g00559 561 PRINTS Ethylene responsive element binding protein signature 409 429 IPR001471 GO:0003700|GO:0006355
Adu05g00559 561 SMART rav1_2 369 433 IPR001471 GO:0003700|GO:0006355
Adu05g00559 561 SMART rav1_2 267 339 IPR001471 GO:0003700|GO:0006355
Adu05g00559 561 Pfam AP2 domain 369 419 IPR001471 GO:0003700|GO:0006355
Adu05g00559 561 Pfam AP2 domain 267 325 IPR001471 GO:0003700|GO:0006355
Adu05g00559 561 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 45 559 - -
Adu05g00559 561 SUPERFAMILY DNA-binding domain 266 335 IPR016177 GO:0003677
Adu05g00559 561 ProSiteProfiles AP2/ERF domain profile. 267 333 IPR001471 GO:0003700|GO:0006355
Adu05g00559 561 ProSiteProfiles AP2/ERF domain profile. 369 427 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00559 Adu-Chr5 6091876 6095022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00559 48 561 AP2-EREBP Transcription Factor Family AT4G37750 49.910 1.79e-160 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Adu05g00559 AP2 9.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00559 K09285 - gmx:100792451 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00559 05 6091876 6095022 Adu01g01154 01 21132573 21137427 PCT