Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00545 ATGGGTCTTGATCAAGATGCCAACAACAATAACAATAATAACTCCTCCTCCTCAGGCCTCGAGCTTGTTCTAGGGTTATCTCTCACCACCACCACGGCCACACCACCTCCTCCGTCAACCAAACCCAAGCCGTATTCATGTCATCATGAGGCACCAGAGCCATCTCTAACGCTAGGTCTATCCGGCGAGAGCTTCCTGAAAAGCAATAATAATAAAGGCGCAGAGGAGCCTACAAGTGGTGAAATGTGTAGACAGGCTTCATCGCCACACAGTAGCGCAGTTTCGTCGTTCTCAAGTGGGGGGTGCAGGGTGGTGGGGGCGTGCGTGAAGAGGGAGAGGGATCTTAGTAGCTGTGAAGAGGCAGATGGTGATGGCGATGGCGAGAGAGTTTCTTCCAGAGTGAGCGACGAAGATGAAGACGGCAGCAATGCCCGAAAGAAGCTGAGGCTCACAAAGGAACAATCTGCTCTTCTTGAAGACAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTGGCGAGGCAGTTAAATCTGAGGCCTCGGCAAGTAGAAGTGTGGTTCCAGAATAGGAGAGCGAGAACAAAGCTGAAGCAGACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAAACATTGACGGACGAGAACAGAAGGCTAAAGAAAGAGCTTCAAGAACTGAAGGCGCTGAAGCTGGCACAACCCTTGTACATGCCTATGCCGGCGGCAACGCTCACCATCTGCCCCTCTTGCGAGAGACTCTCCAACGACCCCCCCGCCAAGCCTCACTTCTATAACCCCTTCACCAACCCCTCTGCAGCATGTTGA 840 0.519 MGLDQDANNNNNNNSSSSGLELVLGLSLTTTTATPPPPSTKPKPYSCHHEAPEPSLTLGLSGESFLKSNNNKGAEEPTSGEMCRQASSPHSSAVSSFSSGGCRVVGACVKRERDLSSCEEADGDGDGERVSSRVSDEDEDGSNARKKLRLTKEQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTICPSCERLSNDPPAKPHFYNPFTNPSAAC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00545 279 Pfam Homeodomain 145 199 IPR001356 GO:0003677
Adu05g00545 279 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Adu05g00545 279 SMART halz 201 244 IPR003106 GO:0006355|GO:0043565
Adu05g00545 279 PANTHER - 15 279 - -
Adu05g00545 279 SUPERFAMILY Homeodomain-like 134 202 IPR009057 -
Adu05g00545 279 Coils Coil 207 237 - -
Adu05g00545 279 SMART HOX_1 143 205 IPR001356 GO:0003677
Adu05g00545 279 MobiDBLite consensus disorder prediction 116 150 - -
Adu05g00545 279 CDD homeodomain 145 202 IPR001356 GO:0003677
Adu05g00545 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 15 279 - -
Adu05g00545 279 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Adu05g00545 279 Gene3D - 138 206 - -
Adu05g00545 279 MobiDBLite consensus disorder prediction 1 100 - -
Adu05g00545 279 Pfam Homeobox associated leucine zipper 201 235 IPR003106 GO:0006355|GO:0043565
Adu05g00545 279 MobiDBLite consensus disorder prediction 1 34 - -
Adu05g00545 279 MobiDBLite consensus disorder prediction 61 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00545 Adu-Chr5 5834618 5836006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00545 1 279 Homeobox Transcription Factor Family AT4G37790 56.230 2.09e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Adu05g00545 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00545 K09338 - gmx:100795135 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00545 05 5834618 5836006 Adu01g01165 01 21898532 21900740 PCT